SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6779

Length: 453 nt

UniGene Fasta

>biog3_v1.0_unigene6779
AATGTGCCATTGTTAAACAGGGTTATGAGAACCCAACCCCTATACAGTGCCAGGCTTTGCCAATTGCGCTATCTGGATGTGATATTATAGGAATAGCCAAGACTGGTTCAGGAAAAACTGCTGCATTTATTCTGCCAATGATTGTGCATATAATGGATCAGCCAGAACTCGCCAAAGGAGAAGGCCCAATTGGTGTTATTTGTGCACCTACAAGAGAATTGGCTCAGCAAATCTGTCTTGAAGCAAAGAAGTTTGCGAAACCTCATGGAATCCGCGTTTCTGGTGTTTTTGGAGGCATGTCAAAACTCGAACAGTTCAAAGAACTAAAGGCTGGTTGTGAGCTAGTGGTTGCTACTCCAGGAAGGTTGATTGACATGCTGAAGATGAAGGCATTAACAATGCTGAGAGCAACTTACCTAGTGCTTGATGAGGCAGATAGGATGTTTGACCTGG

Ace file of the UniGene biog3_v1.0_unigene6779

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5764	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 24 [Arabidopsis thaliana] sp\|O22907.2\|RH24_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 24 gb\|AAL15330.1\| At2g47330/T8I13.17 [Arabidopsis thaliana] gb\|AAB63833.2\| putative ATP-dependent RNA helicase [Arabidop	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	dead-box atp-dependent rna helicase 24	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	92%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	92%
Blast2go	ATP binding	GO:0005524	Molecular Function	92%
Blast2go	mitochondrion	GO:0005739	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Protein-tyrosine phosphatase-like, PTPLA	IPR007482	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKZ7

Fln msg: Distance to subject end: 243 aas, your sequence is shorter than subject: 150 - 504

Fln protein: CAIVKQGYENPTPIQCQALPIALSGCDIIGIAKTGSGKTAAFILPMIVHIMDQPELAKGEGPIGVICAPTRELAQQICLEAKKFAKPHGIRVSGVFGGMSKLEQFKELKAGCELVVATPGRLIDMLKMKALTMLRATYLVLDEADRMFDL

Protein Length: 151

Fln nts: AATGTGCCATTGTTAAACAGGGTTATGAGAACCCAACCCCTATACAGTGCCAGGCTTTGCCAATTGCGCTATCTGGATGTGATATTATAGGAATAGCCAAGACTGGTTCAGGAAAAACTGCTGCATTTATTCTGCCAATGATTGTGCATATAATGGATCAGCCAGAACTCGCCAAAGGAGAAGGCCCAATTGGTGTTATTTGTGCACCTACAAGAGAATTGGCTCAGCAAATCTGTCTTGAAGCAAAGAAGTTTGCGAAACCTCATGGAATCCGCGTTTCTGGTGTTTTTGGAGGCATGTCAAAACTCGAACAGTTCAAAGAACTAAAGGCTGGTTGTGAGCTAGTGGTTGCTACTCCAGGAAGGTTGATTGACATGCTGAAGATGAAGGCATTAACAATGCTGAGAGCAACTTACCTAGTGCTTGATGAGGCAGATAGGATGTTTGACCTGG

Fln Alignment:

Contig6779___IVKQGYENPTPIQCQALPIALSGCDIIGIAKTGSGKTAAFILPMIVHIMDQPELAKGEGPIGVICAPTRELAQQICLEAKKFAKPHGIRVSGVFGGMSKLEQFKELKAGCELVVATPGRLIDMLKMKALTMLRATYLVLDEADRMFDL
B8LKZ7_________________IVKAGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPYLAPGDGPIVLVLAPTRELAVQIQQEAAKFGASSKIKNTCIYGGAPKGPQVRDLSKGVEIVIATPGRLIDMLESQHTNLRRVTYLVLDEADRMLDM

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
70	33			66	0.997452
73		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain