SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6774

Length: 288 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene6774
AATGTCATGTATAAATCCATCAGCAAGCTTCTGTGAAACGGCGCTTCATCCCATTCCATACTCATTCCTTTCCTCCATCATCTCTGTTCACATGGCAGCAGATCCCATGGACTCCATTGATGACGTTTTGGCTCTTGCCACCGTCCAACACATCAATTCATCACGGGATCCCGCAGCAACGCACCAGCTCCAGCTGTATGAGATGATACTCTCTGCCGTCAAGCCGTTGGCTTTGAAAGCAGCCGTGTTGCTCAACATTCCTGACATCATTGCCACACGAGGCAACGG

Ace file of the UniGene biog3_v1.0_unigene6774 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28677	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Caffeic acid O-methyltransferase (Fragment) n=1 Tax=Pinus pinaster RepID=Q9FEU5_PINPS	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	alkaloid o-methyltransferase related	-	-	63%

Source	ECs	Term	Type	e value	Identity
Blast2go	Caffeate O-methyltransferase.	EC:2.1.1.68	-	0.0	63%

Source	KEGGs	Term	Type	Identity
Blast2go	Phenylpropanoid biosynthesis	00940		63%
Blast2go	Biosynthesis of phenylpropanoids	01061		63%
Blast2go	Metabolic pathways	01100		63%
Blast2go	Biosynthesis of secondary metabolites	01110		63%
Blast2go	Myricetin O-methyltransferase.	EC:2.1.1.149	-	63%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Flavone and flavonol biosynthesis	00944		0.0	63%
Blast2go	Quercetin 3-O-methyltransferase.	EC:2.1.1.76	-	0.0	63%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Flavone and flavonol biosynthesis	00944		0.0	63%

Source	GOs	Term	Type	Identity
Blast2go	lignin biosynthetic process	GO:0009809	Biological Process	63%
Blast2go	flavonol biosynthetic process	GO:0051555	Biological Process	63%
Blast2go	caffeate O-methyltransferase activity	GO:0047763	Molecular Function	63%
Blast2go	protein binding	GO:0005515	Molecular Function	63%
Blast2go	myricetin 3'-O-methyltransferase activity	GO:0033799	Molecular Function	63%
Blast2go	quercetin 3-O-methyltransferase activity	GO:0030755	Molecular Function	63%
Blast2go	cytoplasm	GO:0005737	Cellular Component	63%
Blast2go	plasma membrane	GO:0005886	Cellular Component	63%
Blast2go	nucleus	GO:0005634	Cellular Component	63%

Source	InterPros	Term	Type	Identity
Sma3	O-methyltransferase, family 2	IPR001077	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Plant methyltransferase dimerisation	IPR012967	-	-
Sma3	O-methyltransferase, COMT, eukaryota	IPR016461	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU35

Fln msg: Distance to subject end: 323 aas, your sequence is shorter than subject: 95 - 384

Fln protein: MSCINPSASFCETALHPIPYSFLSSIISVHMAADPMDSIDDVLALATVQHINSSRDPAATHQLQLYEMILSAVKPLALKAAVLLNIPDIIATRGN

Protein Length: 96

Fln nts: A_-_ATGTCATGTATAAATCCATCAGCAAGCTTCTGTGAAACGGCGCTTCATCCCATTCCATACTCATTCCTTTCCTCCATCATCTCTGTTCACATGGCAGCAGATCCCATGGACTCCATTGATGACGTTTTGGCTCTTGCCACCGTCCAACACATCAATTCATCACGGGATCCCGCAGCAACGCACCAGCTCCAGCTGTATGAGATGATACTCTCTGCCGTCAAGCCGTTGGCTTTGAAAGCAGCCGTGTTGCTCAACATTCCTGACATCATTGCCACACGAGGCAACGG

Fln Alignment:

Contig6774___MDSIDDVLALATVQHINSSRDPAATHQLQLYEMILSXXXXXXXXXXXXLNIPDIIATRGN
A9NU35_________________MESIDRVFSRGTGQQMISSCESAATQELQLYEMMFSAVKPMALKAAVLLKIPDIIAAQGN

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
82	28		71		1.0
84	71		28		1.0
86	14	71			0.984337
190	14	85			0.993533
191		14		85	0.993533
192	14		85		0.993533
193		85		14	0.993533
227	25			75	0.996473
228		25	75		0.996473
230			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain