SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6761

Length: 387 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene6761
ACAGAAGCAATTTCTGTCCAATGCCATTAAGGGTTTCTCATTTATCAGGTTGGGCAAGAATGAAGGACAAATACTCCAAGCTCTACTGCGGCGCTGCTAAAGATAGAGAGGGAGTTATAGCCAGTTCGGAGCCGTCCGTTAAGCGTCGTCCAGAGTCGGTGGCAGGGGCCGAGAAGGTCAGTGCTGTTCTATTTGACATGGATGGCGTTCTTTGCAACAGTGAAGAGGCGTCTCGCCAGGCCGCCGTGGATCTCTTTGCAGAGATGGGGATCGAAGTTATCACGGACGATTTTATTCCGTTCATGGGAACGGGGAAGCAAATTTTTGGGAGGAGTTGCCCGAGTAAAGAGTGTGAAAGACTTTGATCCCGTGGCAGCAAAGAAACGC

Ace file of the UniGene biog3_v1.0_unigene6761 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2418	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana] gb\|AAL38840.1\| unknown protein [Arabidopsis thaliana] gb\|AEE33400.1\| haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana]	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	nhl repeat-containing protein 2-like	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-phosphoglucomutase.	EC:5.4.2.6	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	84%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	84%
Blast2go	beta-phosphoglucomutase activity	GO:0008801	Molecular Function	84%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	84%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	84%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	84%
Blast2go	membrane	GO:0016020	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNZ5

Fln msg: Overlapping hits, possible frame ERROR between 326 and 316, Distance to subject end: 77 aas, your sequence is shorter than subject: 129 - 223

Fln protein: RSNFCPMPLRVSHLSGWARMKDKYSKLYCGAAKDREGVIASSEPSVKRRPESVAGAEKVSAVLFDMDGVLCNSEEASRQAAVDLFAEMGIEVITDDFIPFMGTGxxxxxGGVARVKSVKDFDPVAAKKR

Protein Length: 130

Fln nts: ACAGAAGCAATTTCTGTCCAATGCCATTAAGGGTTTCTCATTTATCAGGTTGGGCAAGAATGAAGGACAAATACTCCAAGCTCTACTGCGGCGCTGCTAAAGATAGAGAGGGAGTTATAGCCAGTTCGGAGCCGTCCGTTAAGCGTCGTCCAGAGTCGGTGGCAGGGGCCGAGAAGGTCAGTGCTGTTCTATTTGACATGGATGGCGTTCTTTGCAACAGTGAAGAGGCGTCTCGCCAGGCCGCCGTGGATCTCTTTGCAGAGATGGGGATCGAAGTTATCACGGACGATTTTATTCCGTTCATGGGAACGGGGxxxxxxxxxxxxxxxGGAGGAGTTGCCCGAGTAAAGAGTGTGAAAGACTTTGATCCCGTGGCAGCAAAGAAACGC

Fln Alignment:

Contig6761___RSNFCPMPLRVSHLSGWARMKDKYSKLYCGAAKDREGVIASSEPSVKRRPESVAGAEKVSAVLFDMDGVLCNSEEASRQAAVDLFAEMGIEVITDDFIPFMGTGKxxxLGGVARVKSVKDFDPVAAKKR
B8LNZ5_________________RSNFCRTPLRVSNLSGWARMKNKYSRLYCRVAKDGDGVIASSEQSVKP-PEPVAGAEKVNAVLFDMDGVLCNSEEASRQAAVDVFAEMGIEVTTEDFIPFMGTGExxxLGGVARVKSVKDFDPVAAKKR

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
120	33			66	0.997452
121		66		33	0.997452
122		66	33		0.997452
123		66		33	0.997452
124		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain