SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6733

Length: 2568 nt

UniGene Fasta

>biog3_v1.0_unigene6733
TGGGAATCCACCAGTCCGTCAAATCGCAGTTGGTGTCCGGCAGACTCGCCGGCGTCGACTTGCAGCAAGTTTGAAACACCTACCACTATTATACACAACAAAAGCCTGCCTATCTCTGCACCATTCCAAGGGTTTTCGAGAACTGGAATTTTCCTTGGGTTACCTGATTCGGAGAGTCCATCGCTTAACAATCAGCGGCCATTTCACGGCTGTGCAGACTGTACTGCCCTGATCCGAACGGGATTGATATTGAAGGAAAAAATGAAGGAATCCGTTTCCAACGGCGATGTTTCTGCACACAAGCAAGCAGCTCTAACGAGGGACATTTCTGTCTACAGTGAGGTGCAATCGAGCCGTCTGGATCATCAGCTCCGGTTGCCCAGCGTGTTAAAAGCGCCATTTAAGCTCGTCAGTGGACCTCCTACTACCGCTGCTGGAAGTCCAGAGGAGATTGCTAAACTATTTCCGCAACTCTACGGACAGCCATCGGTCCATCTCGAGCCGAGCGATACAGCGGCTTTACAATCAGACCGAAAATTGAACATCGGTGTCGTGCTTTCTGGTGGCCAGGCTCCAGGTGGTCACAATGTCATTGCGGGATTGTTCGATTACGTGCAAAATAACACTAAGGATAGCACTTTGTTTGGATTCAAAGGTGGCCCAGCAGGAATAATGAAATGTAAATATGTTGAGATGACAAAAGAGTTTGTGTATCCATATCGCAACCAGGGTGGCTTTGACATTATTTGCAGTGGCCGAGACAAAATTGAGACTCCTGAACAGTTCAAGCAAGCGGAGGAGACTGTACTGAAGCTTGATTTAGATGGTCTTGTTGTCATTGGTGGAGATGATTCAAATACAAATGCCTGCCTTCTTGCAGAAAAATTCAGAGAGAAAAAGTTAAAAACACAGGTGATTGGCTGTCCAAAAACAATTGATGGTGATCTTAAGTCCAAGGAAGTTCCAACAAGTTTTGGGTTTGACACAGCTTGTAAGATTTATGCAGAGATGATAGGGAATGTGATGGTTGATGCGAGATCAACTGGAAAATATTATCACTTTGTGAGGCTTATGGGCCGTGCTGCTTCACACATCACACTAGAATGTGCTTTGCAGACACATCCCAACATTGCAATAATAGGCGAGGAGGTAGCTTTGAAAAAACAAACTATTCAAGGTGTCACGGGTTACATTACAGATGTGATCTGTAAACGAGCAGAGCTTGGGTACAATTATGGTGTTTTACTTATACCAGAGGGTCTTATTGACTTCATTCCAGAGGTGCAACAGCTGATTGCTGAGCTGAATGAGATTTTGGCTCATGATGTAATAGATGAAGGTGGCCTTTGGAAACAAAAACTGCAACCTCAATGCCGAACACTCTTTGACTTTTTACCTGAAAGTATTCGAGAGCAATTGATGCTTGAAAGGGATCCTCATGGAAATGTGCAGGTTGCAAAAATAGAGACTGAAAAAATGTTTATATCGATGGTTGAAACTGAATTGGAAAAAAGAAAGGAAGAGGGGACCTACAAAGGACATTTTAAAGGGCAATCACATTTCTTTGGCTATGAGGGAAGATGTGGGTTGCCGACAAATTTTGATGCAACTTACTGCTATGCTCTGGGGTATGCAGCAGGAGTACTTCTTCATGCCGGACATACAGGACTCATAGCTTCGGTTGGCAATTTGGCAGCACCAGCAGAAGATTGGCTAGTTGGTGGAACTGCTCTTACACAGCTCATGGATGTTGAGAGACGAAAAGGAAAGTTCAAGCCTGTTATTCAGAAAGCTATGGTGGCACTAGATGGAGCACCGTTCAAGAAGTTTGCTTCCTTGCGGGAAGAATGGGCTTTGCAGAATAAATACATCAGTCCAGGTCCTATTCAGTTTTTTGGCCCGACTGCAGACAACAGCAACTTCACGTTGATGTTAGAACTTGGAGCAATGGCTTGACTCTAGAAGTTCAGGTGTCAAAACAAAATCGCTAAAGTTTTGGGGTTCTGTAATATTTGGGTTTTGGTCATATAACTTCTTGCATTTTGGGCTTAGTTGTAACAGCTTGAAATAATAGTTCCCCATGGCCGCAAGGGTGTCCTCCAATTTTTAATCCTGTGGTTCTGATGCGTCATGTTTGGCAGAGCATGCCCGAGGAACCATGTTACTTCAAGGATTCAGGAATTTCTCCCGAATGCACTGTTGGTTGAACGAAGCTCATGATTGAAGTAGATGCTTGGTAACATTTTCTCGTTAGTTTGTCATTCTCGTCCGCCCTCTGGTTATGGGTGAAACACTGAAACGTTGATAGCTTAGCCAACCTTTTGGAAAGGTGGCATGCTTGTCAAATTTCAAATAAAATTTTGCATTCTTTGGTAGAAGCATATGCTTTACCCAGTGCATTTGAGACAGACCTGAAGTATGCTATAATTGTGTCACTTAGAGTAATATGCTACTTGACAGAATCTTTAGCAATTTGGTTTCTGTTATAATATGAGAATAGATAAAATACACCTTTTATCAGGCGATTATGAAGCAGTTTTATCATGCGAAAATAAAGTTTCCTTGTTC

Ace file of the UniGene biog3_v1.0_unigene6733

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15415	122/136
SustainPine v2.0	sp_v2.0_unigene15465	14/136

Source	Descriptions	Term	Type	Identity
AutoFact	pyrophosphate-dependent phosphofructokinase beta subunit [Citrus x paradisi]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta-like	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.7.1.9-	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	photosynthesis	GO:0015979	Biological Process	87%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	87%
Blast2go	diphosphate-fructose-6-phosphate 1-phosphotransferase activity	GO:0047334	Molecular Function	87%
Blast2go	cell wall	GO:0005618	Cellular Component	87%
Blast2go	membrane	GO:0016020	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pyrophosphate-dependent phosphofructokinase PfpB	IPR011183	-	0.0	-
Sma3	Phosphofructokinase domain	IPR000023	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0C2

Fln msg: your sequence is longer than subject: 565 - 317

Fln protein: MKESVSNGDVSAHKQAALTRDISVYSEVQSSRLDHQLRLPSVLKAPFKLVSGPPTTAAGSPEEIAKLFPQLYGQPSVHLEPSDTAALQSDRKLNIGVVLSGGQAPGGHNVIAGLFDYVQNNTKDSTLFGFKGGPAGIMKCKYVEMTKEFVYPYRNQGGFDIICSGRDKIETPEQFKQAEETVLKLDLDGLVVIGGDDSNTNACLLAEKFREKKLKTQVIGCPKTIDGDLKSKEVPTSFGFDTACKIYAEMIGNVMVDARSTGKYYHFVRLMGRAASHITLECALQTHPNIAIIGEEVALKKQTIQGVTGYITDVICKRAELGYNYGVLLIPEGLIDFIPEVQQLIAELNEILAHDVIDEGGLWKQKLQPQCRTLFDFLPESIREQLMLERDPHGNVQVAKIETEKMFISMVETELEKRKEEGTYKGHFKGQSHFFGYEGRCGLPTNFDATYCYALGYAAGVLLHAGHTGLIASVGNLAAPAEDWLVGGTALTQLMDVERRKGKFKPVIQKAMVALDGAPFKKFASLREEWALQNKYISPGPIQFFGPTADNSNFTLMLELGAMA*

Protein Length: 566

Fln nts: TGGGAATCCACCAGTCCGTCAAATCGCAGTTGGTGTCCGGCAGACTCGCCGGCGTCGACTTGCAGCAAGTTTGAAACACCTACCACTATTATACACAACAAAAGCCTGCCTATCTCTGCACCATTCCAAGGGTTTTCGAGAACTGGAATTTTCCTTGGGTTACCTGATTCGGAGAGTCCATCGCTTAACAATCAGCGGCCATTTCACGGCTGTGCAGACTGTACTGCCCTGATCCGAACGGGATTGATATTGAAGGAAAAA_-_ATGAAGGAATCCGTTTCCAACGGCGATGTTTCTGCACACAAGCAAGCAGCTCTAACGAGGGACATTTCTGTCTACAGTGAGGTGCAATCGAGCCGTCTGGATCATCAGCTCCGGTTGCCCAGCGTGTTAAAAGCGCCATTTAAGCTCGTCAGTGGACCTCCTACTACCGCTGCTGGAAGTCCAGAGGAGATTGCTAAACTATTTCCGCAACTCTACGGACAGCCATCGGTCCATCTCGAGCCGAGCGATACAGCGGCTTTACAATCAGACCGAAAATTGAACATCGGTGTCGTGCTTTCTGGTGGCCAGGCTCCAGGTGGTCACAATGTCATTGCGGGATTGTTCGATTACGTGCAAAATAACACTAAGGATAGCACTTTGTTTGGATTCAAAGGTGGCCCAGCAGGAATAATGAAATGTAAATATGTTGAGATGACAAAAGAGTTTGTGTATCCATATCGCAACCAGGGTGGCTTTGACATTATTTGCAGTGGCCGAGACAAAATTGAGACTCCTGAACAGTTCAAGCAAGCGGAGGAGACTGTACTGAAGCTTGATTTAGATGGTCTTGTTGTCATTGGTGGAGATGATTCAAATACAAATGCCTGCCTTCTTGCAGAAAAATTCAGAGAGAAAAAGTTAAAAACACAGGTGATTGGCTGTCCAAAAACAATTGATGGTGATCTTAAGTCCAAGGAAGTTCCAACAAGTTTTGGGTTTGACACAGCTTGTAAGATTTATGCAGAGATGATAGGGAATGTGATGGTTGATGCGAGATCAACTGGAAAATATTATCACTTTGTGAGGCTTATGGGCCGTGCTGCTTCACACATCACACTAGAATGTGCTTTGCAGACACATCCCAACATTGCAATAATAGGCGAGGAGGTAGCTTTGAAAAAACAAACTATTCAAGGTGTCACGGGTTACATTACAGATGTGATCTGTAAACGAGCAGAGCTTGGGTACAATTATGGTGTTTTACTTATACCAGAGGGTCTTATTGACTTCATTCCAGAGGTGCAACAGCTGATTGCTGAGCTGAATGAGATTTTGGCTCATGATGTAATAGATGAAGGTGGCCTTTGGAAACAAAAACTGCAACCTCAATGCCGAACACTCTTTGACTTTTTACCTGAAAGTATTCGAGAGCAATTGATGCTTGAAAGGGATCCTCATGGAAATGTGCAGGTTGCAAAAATAGAGACTGAAAAAATGTTTATATCGATGGTTGAAACTGAATTGGAAAAAAGAAAGGAAGAGGGGACCTACAAAGGACATTTTAAAGGGCAATCACATTTCTTTGGCTATGAGGGAAGATGTGGGTTGCCGACAAATTTTGATGCAACTTACTGCTATGCTCTGGGGTATGCAGCAGGAGTACTTCTTCATGCCGGACATACAGGACTCATAGCTTCGGTTGGCAATTTGGCAGCACCAGCAGAAGATTGGCTAGTTGGTGGAACTGCTCTTACACAGCTCATGGATGTTGAGAGACGAAAAGGAAAGTTCAAGCCTGTTATTCAGAAAGCTATGGTGGCACTAGATGGAGCACCGTTCAAGAAGTTTGCTTCCTTGCGGGAAGAATGGGCTTTGCAGAATAAATACATCAGTCCAGGTCCTATTCAGTTTTTTGGCCCGACTGCAGACAACAGCAACTTCACGTTGATGTTAGAACTTGGAGCAATGGCTTGA___CTCTAGAAGTTCAGGTGTCAAAACAAAATCGCTAAAGTTTTGGGGTTCTGTAATATTTGGGTTTTGGTCATATAACTTCTTGCATTTTGGGCTTAGTTGTAACAGCTTGAAATAATAGTTCCCCATGGCCGCAAGGGTGTCCTCCAATTTTTAATCCTGTGGTTCTGATGCGTCATGTTTGGCAGAGCATGCCCGAGGAACCATGTTACTTCAAGGATTCAGGAATTTCTCCCGAATGCACTGTTGGTTGAACGAAGCTCATGATTGAAGTAGATGCTTGGTAACATTTTCTCGTTAGTTTGTCATTCTCGTCCGCCCTCTGGTTATGGGTGAAACACTGAAACGTTGATAGCTTAGCCAACCTTTTGGAAAGGTGGCATGCTTGTCAAATTTCAAATAAAATTTTGCATTCTTTGGTAGAAGCATATGCTTTACCCAGTGCATTTGAGACAGACCTGAAGTATGCTATAATTGTGTCACTTAGAGTAATATGCTACTTGACAGAATCTTTAGCAATTTGGTTTCTGTTATAATATGAGAATAGATAAAATACACCTTTTATCAGGCGATTATGAAGCAGTTTTATCATGCGAAAATAAAGTTTCCTTGTTC

Fln Alignment:

Contig6733___MKESVSNGDVSAHKQAALTRDISVYSEVQSSRLDHQLRLPSVLKAPFKLVSGPPTTAAGSPEEIAKLFPQLYGQPSVHLEPSDTAALQSDRKLNIGVVLSGGQAPGGHNVIAGLFDYVQNNTKDSTLFGFKGGPAGIMKCKYVEMTKEFVYPYRNQGGFDIICSGRDKIETPEQFKQAEETXXXXXXXXXXXXXXXXSNTNACLLAEKFREKKLKTQVIGCPKTIDGDLKSKEVPTSFGFDTACKIYAEMIGNVMVDARSTGKYYHFVRLMGRAASHITLECALQTHPNIAIIGEEV
A9P0C2_________________MKEFVSNGDVSAHKQAALTRDISVYSEVQSSRLDHQLPLPSVLEAPFKLVSGPPTTAAGSPEDIAKLFPQLYGQPSVHLVPSDTAALKSDRKLNIGVVLSGGQAPGGHNVIAGLFDYVQNNTKDSRLFGFNGGPAGIMKCKYVEMTKEFVYPYRNQGGFDIICSGRDKIETPEQFRQAEETVLKLDLDGLVVIGGDDSNTNACLLAEKFREKNLKTQVIGCPKTIDGDLKSKEVPTSFGFDTACKIYAEMIGNVMVDARSTGKYYHFVRLMGRAASHITLECALQTHPNITVIGEEV

SNPs (tot: 81)

Position	A %	C %	G %	T %	Probability
120	25		75		0.996473
121		75		25	0.996473
122	75		25		0.996473
123		75		25	0.996473
269			85	14	0.993533
271	85			14	0.993533
277	14			85	0.993533
371	16		83		0.994512
374		83		16	0.994512
427	11	88			0.923564
429	88		11		0.923564
430		88		11	0.923564
506	10		90		0.90298
509		90		10	0.90298
554	20	80			0.999996
555	20		80		0.999996
558		80		20	0.999996
625	90			10	0.90298
785	11		88		0.999952
852	14		85		0.999981
924	11			88	0.923564
925	11		88		0.923564
927		88	11		0.923564
928		88		11	0.923564
942	18		81		0.999994
943	18		81		0.999994
1103	76		23		1.0
1151		11	88		0.923564
1152	11		88		0.923564
1154	88			11	0.923564
1221		14	85		0.993533
1375	10		90		0.90298
1377	10	90			0.90298
1378			90	10	0.90298
1379	90			10	0.90298
1409	11			88	0.923564
1413		11	77	11	0.968132
1414	88			11	0.923564
1415			87	12	0.992554
1416		87		12	0.992554
1433	14		85		0.993533
1434		14	85		0.993533
1437		85		14	0.993533
1469			85	14	0.993533
1471	14	85			0.993533
1478	71	28			1.0
1521		25	75		0.996473
1523	75			25	0.996473
1524			75	25	0.996473
1772	15		84		0.999986
1813		10	90		0.90298
1815			90	10	0.90298
1816		90		10	0.90298
1843	25		75		1.0
1844			75	25	1.0
1845			75	25	1.0
1918		66	33		0.997452
1920	33		66		0.997452
2077	75		25		0.996473
2078			75	25	0.996473
2163	87	12			0.992554
2165	12		87		0.992554
2166			12	87	0.992554
2167	12			87	0.992554
2169		87	12		0.992554
2176		12	87		0.992554
2223			85	14	0.993533
2236		16	83		0.994512
2237	28	71			1.0
2238	14			85	0.993533
2241			83	16	0.994512
2258	14		85		0.993533
2259	12			87	0.992554
2260	12		12	75	0.975346
2323	11	88			0.923564
2324	11			88	0.923564
2326			11	88	0.923564
2380		22	77		0.999999
2382	77			22	0.999999
2383			77	22	0.999999
2451	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain