SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6726

Length: 912 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6726

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8955	12/13

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative CC-NBS-LRR protein (Fragment) n=1 Tax=Pinus monticola RepID=A5WZ02_PINMO	-	-	1.99965e-42	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	disease resistance protein at4g27190-like	-	-	0.0	49%

Source	InterPros	Term	Type	e value	Identity
Sma3	NB-ARC	IPR002182	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR16

Fln msg: Distance to subject end: 387 aas, your sequence is shorter than subject: 303 - 966

Fln protein: LLLTHRSNCRVVVSSRDRRVLSEIGVAETSVIRMGDLVEEDSWQLFSIYAFPHNNGKRPANIDEKTAKVVCANCGGLPLAIKVAGRAMAATTHPQEWELAAQRLPISDSHQQADSSHQLYDRLRLSYDALGNHSVNLQMCFLYAAAAFQEGEIIQVESEVIPLWSGEGLLGRKKQPEDAVSDPLKMGRIYVELLADRCLIEPMIRDIDGRVHSFRIHDVLRNLGIQIAEREEGFYCRVGTALTALPENEWLGRTRMLLSRNQMNSLPESLRSPAICSLLMYRNRHFTKIPKRVIGSMTSLRVH

Protein Length: 304

Fln nts: TGCTGCTGCTAACCCACCGCTCCAACTGCAGAGTTGTTGTAAGTTCAAGGGATCGCAGAGTCCTGTCAGAGATTGGAGTTGCAGAGACATCTGTAATAAGAATGGGGGATTTGGTAGAAGAGGACAGCTGGCAGCTATTTTCTATTTATGCTTTTCCACATAACAATGGAAAACGGCCAGCAAATATAGATGAGAAAACGGCAAAGGTTGTGTGTGCTAACTGTGGAGGGCTTCCGCTAGCTATTAAAGTCGCGGGGAGGGCAATGGCAGCCACAACTCATCCACAGGAGTGGGAATTGGCAGCCCAGAGGTTGCCAATATCTGACAGCCACCAGCAGGCAGACTCATCTCATCAATTGTATGATCGCCTACGGTTGAGTTACGATGCACTTGGTAATCACAGCGTCAACTTGCAAATGTGCTTTCTCTATGCAGCTGCCGCCTTCCAAGAAGGCGAAATTATTCAGGTGGAATCTGAAGTAATTCCGTTGTGGTCTGGGGAAGGGCTTCTTGGAAGGAAGAAGCAGCCAGAAGATGCAGTGTCCGACCCACTGAAAATGGGAAGGATTTATGTTGAGCTCCTCGCAGATCGTTGTCTCATCGAACCCATGATCAGAGACATCGATGGCCGCGTGCACTCCTTCAGGATCCACGACGTCCTCCGTAATTTGGGAATTCAAATTGCGGAGCGGGAAGAAGGTTTCTACTGCCGCGTAGGCACGGCTTTGACAGCATTGCCTGAGAACGAGTGGTTGGGGCGCACTCGGATGTTGTTGAGCCGCAACCAAATGAATTCGCTTCCAGAATCATTGAGAAGTCCAGCGATATGCTCATTGTTAATGTATAGAAACAGACATTTCACCAAAATTCCAAAGCGGGTGATTGGGAGTATGACCTCTCTTAGGGTACATT

Fln Alignment:

Contig6726___LVEEDSWQLFSIYAFPHNNGKRPANIDEKTAKVVCANCGGLPLAIKVAGRAMAATTHPQEWELA---AQRLPIXXXXXXXXXXXXLYDRLRLSYDALGNHSVNLQMCFLYAAAAFQEGEIIQVESEVIPLWSGEGLLGRKKQPEDAVSDPLKMGRIYVELLADRCLIEPMIRDIDG-RVHSFRIHDVLRNLGIQIAEREEGFYCRVGTALTALPENE-WLGRTRMLLSRNQMNSLPESLRSPAICSLLMYRNRHFTKIPKRVIGSMTSLRV
B8LR16_________________LSTEEGWELFRRGAFT-NGVVRESNIDEAIARDIATECQGLPLAINAVAAAMSCKTTNDEWSRALTMMRNADPSFPTTHRTIDAELYQRLRWSYNDLSDR--NLQICFLY-CASFPEDASIRVE-DLVHLWSAEGLITQR-----GTTYLMDIGREYIDLLVSRCLVQ--YADWPGFKQQSLRVHDVLRDMAIYVGQREENWLFAAGQHLQDFPSQEQTLDCKRISIFGNDIHDLPMNFRCPKLVSLVLSCNENLTEVPEGFLSNLASLRV

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
132		75		25	0.996473
134	25		75		0.996473
159		75		25	0.996473
175	33		66		0.997452
176		33	66		0.997452
177	33	66			0.997452
178		66		33	0.997452
179	66			33	0.997452
184	60			40	1.0
231	20		80		0.995493
232		20	80		0.995493
233	20		80		0.995493
234		80		20	0.995493
291	25		75		0.996473
294			75	25	0.996473
508			66	33	0.997452
618		75	25		0.996473
715			83	16	0.994512
740	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain