SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6719

Length: 1128 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6719

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2881	3/36
SustainPine v2.0	sp_v2.0_unigene28755	33/36

Source	Descriptions	Term	Type	Identity
AutoFact	MA3 domain-containing protein [Arabidopsis thaliana] ref\|NP_851255.1\| MA3 domain-containing protein [Arabidopsis thaliana] gb\|AAK64051.1\| putative topoisomerase [Arabidopsis thaliana] gb\|AAN13205.1\| putative topoisomerase [Arabidopsis thaliana] gb\|AED9771	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	ma3 domain-containing protein	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Initiation factor eIF-4 gamma, MA3	IPR003891	-	-
Sma3	Transketolase, N-terminal	IPR005474	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC81

Fln msg: your sequence is shorter than subject: 278 - 395

Fln protein: CDSKGVEVIQKAEKSYLSAPLHAEIIERRWGGSTHITVEEVKKKISDLLNEYVESGDKVEACRCIRDLNVPFFHHEVVKRALILAMERRSAEPQILALLKESAEEGLITYSQMSKGFGRLADTVDDLSLDIINAKDMFESLVLKATTEGWLSPASVKSIPSEQNGPAEHDNARLFKERAVTIIQEYFLSDDISEVTRSLEDLAAPDFNAVFVKRLITLAMDRKNREKEMASVLLSALYTEVFPVEDIVNGFVLLLESAEDTALDIPDAANEHSPFPG*

Protein Length: 279

Fln nts: AATGTGATTCAAAGGGAGTTGAAGTAATTCAAAAGGCAGAGAAAAGCTATTTATCAGCTCCTCTTCATGCGGAGATTATTGAACGTCGATGGGGTGGCAGTACCCATATCACAGTAGAAGAAGTAAAAAAGAAGATAAGCGACTTGTTGAATGAGTATGTTGAGAGTGGTGACAAGGTAGAAGCTTGTCGTTGTATAAGAGATTTGAATGTTCCTTTCTTTCATCATGAAGTCGTAAAGAGGGCTTTAATTTTAGCCATGGAACGAAGAAGTGCAGAGCCACAGATCTTGGCTCTATTGAAAGAATCTGCTGAGGAGGGTCTAATAACATATAGTCAGATGTCGAAGGGTTTTGGTAGGCTTGCTGATACTGTAGATGATTTGTCACTTGACATAATCAATGCGAAGGACATGTTTGAATCTTTGGTTTTGAAGGCAACAACAGAGGGATGGCTTAGTCCAGCATCTGTTAAGTCCATCCCTAGTGAACAGAATGGACCTGCAGAGCATGATAATGCAAGGCTCTTCAAGGAGAGGGCAGTGACTATTATTCAAGAGTACTTCCTTTCTGATGATATCTCTGAAGTCACGAGGAGTCTAGAAGATCTTGCCGCCCCCGATTTCAATGCAGTTTTTGTTAAGAGGCTTATAACATTAGCTATGGACAGAAAGAATAGAGAGAAAGAAATGGCTTCTGTTTTGTTGTCTGCTCTCTATACAGAGGTGTTTCCAGTTGAGGATATTGTGAATGGTTTTGTTCTGCTACTAGAATCTGCTGAGGACACTGCATTAGACATACCTGATGCTGCAAATGAACATAGCCCTTTTCCTGGCTAG___AGCTGTTATAGATGATATTTTGGCTCCACTGAATTTAGAAGAAATCGACAGCCAATTAAAGCCAGGATCTATTGGAAGAGAAATAGTGCACATGGCTCGTTCTCTCCTAGCTGCTCGCCTTGCTGGTGAGCGTATTCTTAGGTGTTGGGGTGGTGGCACTGGGTGGGCAGTTGAGGATGCAAAGGACAAAATCAACAAACTGTTGGAGGAATATGAGACAGGAGGAGATATTGGAGAAGCATGCCAATGCATACGGGACCTCAATATGCCTTTCTTCCACCACGAAGTTGTC

Fln Alignment:

Contig6719___STHITVEEVKKKISDLLNEYVESGDKVEACRCIRDLNVPFFHHEVVKRALILAMERRSAEPQILALLKE---SAEEGLITYSQMSKGFGRLADTVDDLSLDIINAKDMFESLVLKATTEGWL
D5AC81_________________SSQLTEVQLRKKAEMAIHEYYSVRDIKEAALCVDDLKAPLFHPTMVSLWITDSFDRKDVEVDLLGNLLTYLCKTEPFLLNEEQLVEGLGTVLFSLEDTTVDAPKAPEFLGRILAKLVVEGIL

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
876	33			66	0.997452
879	66			33	0.997452
939	12		87		0.992554
940	12			87	0.992554
942		87	12		0.992554
970	12		75		0.975346
1001			87	12	0.992554
1003			71	28	1.0
1015	28		71		1.0
1024	28		71		1.0
1029	83	16			0.994512
1031	83			16	0.994512
1039	80		20		0.995493
1045	20		80		0.995493
1053	80			20	0.995493
1062	20		80		0.995493
1065			80	20	0.995493
1066			80	20	0.995493
1068		25	75		0.996473
1071	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain