SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6697

Length: 392 nt

UniGene Fasta

>biog3_v1.0_unigene6697
CAGTGCTGCTCGTGTGTGGTGGATGTTCAGAGTTTTTGGTCATGACAAAGTTTGGGTTCTAGATGGAGGCTTACCGCAATGGCGTGGTTCAGGCTATGAAGTGGAGACAAGTGCCTCTGGTGATGCAATTTTGAAGGTCATGGAAGCCAGTGATGTTATTGAGAAAGTGTATCAGGGCAACCGGTTGCTCCCATCAGTTTTACCACAAATTTTCAACCGCATTTAGTGTGGTCTTTGGAACAGGTGAAACATAATATAGAGGAAAAAAAGTACCAACACATTGATGCACGTGGAAAGTCCAGGTTTGATGGTGCAGTACCAGAGCCTCGCAAAGGTATTAGAAGTGGTCATGTGCCTGGAAGTAAATGCATCCCTTTCAATGAGGTAACATT

Ace file of the UniGene biog3_v1.0_unigene6697

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6717	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Thiosulfate sulfurtransferase n=1 Tax=Datisca glomerata RepID=Q9ZPK0_DATGL	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	thiosulfate sulfurtransferase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Thiosulfate sulfurtransferase.	EC:2.8.1.1	-	0.0	86%
Blast2go	3-mercaptopyruvate sulfurtransferase.	EC:2.8.1.2	-	0.0	86%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Cysteine and methionine metabolism	00270		0.0	86%
Blast2go	Metabolic pathways	01100		0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	aging	GO:0007568	Biological Process	86%
Blast2go	sulfate transport	GO:0008272	Biological Process	86%
Blast2go	thiosulfate sulfurtransferase activity	GO:0004792	Molecular Function	86%
Blast2go	3-mercaptopyruvate sulfurtransferase activity	GO:0016784	Molecular Function	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Rhodanese-like	IPR001763	-	0.0	-
Sma3	Thiosulphate sulfurtransferase, conserved site	IPR001307	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWI8

Fln msg: Overlapping hits, possible frame ERROR between 178 and 175, Distance to subject end: 76 aas, your sequence is shorter than subject: 130 - 396

Fln protein: SAARVWWMFRVFGHDKVWVLDGGLPQWRGSGYEVETSASGDAILKVMEASDVIEKVYxxxPVAPISFTTNFQPHLVWSLEQVKHNIEEKKYQHIDARGKSRFDGAVPEPRKGIRSGHVPGSKCIPFNEVT

Protein Length: 131

Fln nts: CAGTGCTGCTCGTGTGTGGTGGATGTTCAGAGTTTTTGGTCATGACAAAGTTTGGGTTCTAGATGGAGGCTTACCGCAATGGCGTGGTTCAGGCTATGAAGTGGAGACAAGTGCCTCTGGTGATGCAATTTTGAAGGTCATGGAAGCCAGTGATGTTATTGAGAAAGTGTATxxxxxxxxxCCGGTTGCTCCCATCAGTTTTACCACAAATTTTCAACCGCATTTAGTGTGGTCTTTGGAACAGGTGAAACATAATATAGAGGAAAAAAAGTACCAACACATTGATGCACGTGGAAAGTCCAGGTTTGATGGTGCAGTACCAGAGCCTCGCAAAGGTATTAGAAGTGGTCATGTGCCTGGAAGTAAATGCATCCCTTTCAATGAGGTAACATT

Fln Alignment:

Contig6697___SAARVWWMFRVFGHDKVWVLDGGLPQWRGSGYEVETSASGDAILKVMEASDVIEKVYQxQPVAPISFTTNFQPHLVWSLEQVKHNIEEKKYQHIDARGKSRFDGAVPEPRKGIRSGHVPGSKCIPFNEV
A9NWI8_________________SAARVWWMFRVFGHDKVWVLDGGLPQWRASGYEVETSASGDAILKVMEASDVIEKVYRxQLVAHTSFTTDFQPHLVWSLEQVKCNMEDKKFQHIDARGKARFEGAAPEPRKGIRSGHVPGSKCIPFNEV

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
247			66	33	0.997452
347	20			80	0.995493
348		20	80		0.995493
349	20		80		0.995493
351		80		20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain