SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6692

Length: 1303 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6692

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10857	37/39
SustainPine v2.0	sp_v2.0_unigene65517	1/39

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosomal protein L1p/L10e family protein [Arabidopsis thaliana] emb\|CAB88283.1\| putative protein [Arabidopsis thaliana] gb\|AAL49900.1\| unknown protein [Arabidopsis thaliana] gb\|AEE79812.1\| ribosomal protein L1p/L10e family protein [Arabidopsis thaliana]	-	-	1.0e-28	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	ribosomal l1 domain-containing protein 1-like	-	-	0.0	59%

Source	GOs	Term	Type	Identity
Blast2go	cellular macromolecule metabolic process	GO:0044260	Biological Process	59%
Blast2go	gene expression	GO:0010467	Biological Process	59%
Blast2go	primary metabolic process	GO:0044238	Biological Process	59%
Blast2go	intracellular non-membrane-bounded organelle	GO:0043232	Cellular Component	59%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR24

Fln msg: STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 363 - 501

Fln protein: MVNRENESNGSQVSSRVSKEIVELAVELLLTVTNLKPKDQKPQGLGCNEFIYLVVTLKRRPDGTRTIPLSIPVPHPLFRLDGSQKICLIVGNGKEVLQAAETKIKEEDLHISKVFERKQLMAHCRTSEDREKLRLSFDLFMANKAVRIPKFTGLECPTDQRNMLPVDLTHQKWRGELESACSLAYISFISTGCVANVARVSHSSKEIVENVVAVIDSLVSAIPKKWNNIRHMYLKTLGSLDYSLYRSSTMLPIEMEGVEKEAQIDRPKINGEEGITGGLSSKKRTSDAEKTPNTKKKKGSSLEGETGSLSGQDVGDGVPMDDSPTTPALEKIIESVDLQESVDLQCGVVAKSIDTSKKNIRGN

Protein Length: 364

Fln nts: CGGGACCCACTTACGCATTGCCAATAAGTCGTTAATGGTGTATGGTTTAGGGTTTTTGAGTGTCTGGGTCTTCTTATACACAATTTATTTTCACGGTTCCTTAACGATTCAACACAGAGAAGAATCTTCTTACGAGGTCTACTGAGGAGCGTTGCTTGGTAAGTTTGAAACTTCATCTTTCCTTCTTTCAGTTTCGTGCTTCATCAGTTGCC_-_ATGGTTAATAGAGAGAACGAAAGCAATGGATCCCAAGTATCCTCTCGAGTAAGCAAGGAAATAGTAGAATTAGCAGTAGAACTGCTCTTGACGGTGACTAATTTAAAGCCTAAGGATCAGAAACCTCAAGGCCTGGGTTGCAATGAGTTTATTTATTTGGTTGTTACGCTGAAAAGGAGACCTGATGGTACACGAACGATTCCCTTGAGCATCCCAGTACCTCATCCCCTGTTTCGTTTGGATGGAAGCCAAAAGATCTGTTTGATTGTCGGCAATGGAAAAGAGGTTTTACAAGCTGCCGAGACCAAGATTAAGGAGGAGGATTTACACATTTCAAAGGTCTTTGAGCGCAAACAGCTAATGGCTCATTGTAGGACATCCGAGGATAGGGAAAAACTGCGTCTGTCTTTTGATTTGTTCATGGCAAATAAAGCAGTGCGGATCCCTAAGTTCACAGGGTTAGAATGCCCCACAGATCAAAGGAATATGCTCCCCGTGGATTTGACCCACCAGAAATGGAGGGGAGAACTGGAGTCAGCTTGCAGTTTGGCTTATATCTCCTTTATCAGTACTGGTTGTGTTGCTAATGTGGCTAGGGTTTCTCATAGCAGCAAGGAAATAGTGGAGAATGTTGTTGCTGTTATCGACAGTCTTGTGTCCGCGATTCCGAAAAAGTGGAATAACATCCGTCATATGTATCTGAAGACCTTGGGCTCTCTGGACTATTCACTTTACAGATCCTCTACAATGCTGCCCATTGAGATGGAAGGTGTGGAAAAAGAAGCACAAATTGACCGACCAAAGATAAATGGGGAAGAAGGGATTACAGGTGGGCTTTCTAGTAAGAAAAGGACTAGTGACGCAGAGAAAACCCCGAACACAAAGAAGAAGAAAGGCTCCTCTTTAGAGGGTGAAACGGGATCTTTAAGTGGTCAAGATGTCGGTGATGGAGTTCCAATGGATGATTCTCCTACAACTCCAGCACTCGAAAAGATTATTGAGTCTGTAGATTTGCAAGAGTCTGTAGATTTGCAATGTGGGGTCGTGGCCAAGAGCATCGATACTTCAAAAAAGAACATTCGAGGAAATCG

Fln Alignment:

Contig6692___MVNRENESNGSQVSSRVSKXXXXXXXXXXXXXXXXKPKDQKPQGLGCNEFIYLVVTLKRRPDGTRTIPLSIPVPHPLFRLDGSQKICLIVGNGKEVLQA--AETKIKEEDLHISKVFERKQLMAHCRTSE--DREKLRLSFDLFMANKAVRIPKFTGL---ECPTDQRNMLPVDLTHQKWRGELESACSLAYISFISTGCVANVARVSHSSKEIVENVVAVIDSLVSAIPKKWNNIRHMYLKTLGSLDYSLYRSSTMLPIEMEGVEKEAQIDRPKINGEEGITGGLSSKKRTSDAEKTPNXXXXXXXXXXXXXXXXXXQDVGDGVPMDDSPTTPALEKIIESVDLQESV
B8LR24_________________MANRENENDESQVSSPVSKEIVELAVELLLKVINSKPKDQKPQRVDRKEFICLVVQLKMRVDSTSTIPESIPVPHPLFRFDGSQAICLIIGDEIEGLNAEVAENKIKDEGLPISKVFQCEKLQADCKTFKFKDRNKLCQSFDLFMAYKSV-VPIIPGLLWSTFPLNERYVVPVDLTHKQWRGELESACSLAIVSSKRSTCVAKVARVSQTSKEIVENVVAVIDRLVSVLPGKWNNISCMFLKTSDSLQCSLYTCLSKMPVGIEDVETGSEIDAPKMNGEAGIAGGLFSKKRIQHSEKTLDTKRKKGLSLEGKTECLNGQDVGDGVPKDDSPPTSGLEKNVESVDLQGGV

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
261		20	80		0.995493
263	80			20	0.995493
386	80			20	0.995493
469	14			85	0.993533
680		90		10	0.90298
701	11		88		0.923564
704		87		12	0.992554
711	14		85		0.993533
735	25		75		0.996473
1106	88	11			0.923564
1108			88	11	0.923564
1109			88	11	0.923564
1122		12	87		0.992554
1123	12		87		0.992554
1124			87	12	0.992554
1211	14			85	0.993533
1214	85			14	0.993533
1240		14	85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain