SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6636

Length: 834 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6636

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28239	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoglucosamine mutase [Carica papaya]	-	-	57%
FL-Next	sp=Phosphoacetylglucosamine mutase; Arabidopsis thaliana (Mouse-ear cress).	-	-	62%
Blast2go	phosphoacetylglucosamine mutase	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	photoreactive repair	GO:0000719	Biological Process	73%
Blast2go	response to UV	GO:0009411	Biological Process	73%
Blast2go	cytosol	GO:0005829	Cellular Component	73%
Blast2go	mitochondrion	GO:0005739	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Alpha-D-phosphohexomutase, C-terminal	IPR005843	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain I	IPR005844	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha domain II	IPR005845	-	-
Sma3	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	IPR016055	-	-
Sma3	Alpha-D-phosphohexomutase, conserved site	IPR016066	-	-
Sma3	Phosphoacetylglucosamine mutase	IPR016657	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P57750

Fln msg: Separated hits, possible frame ERROR between 308 and 328, Unexpected STOP codon at 3' end. Distance to subject end: 258 aas, your sequence is shorter than subject: 272 - 556

Fln protein: GIRFAYGTAGFRYNGLLLSSTIFRVGVLAALRSLKTGSVTGLMITASHNPESDNGVKVADPGGGILTQEWEPFADAIANAVNAENFVQLIDEFIKKQGILCxxxxxxxxVLVARDTRPSGEELLSAAIQGIGAVKGVMTVDMGILTTPQLHWMVRSRNKGMPATESDYYVQLSSSVKILMETSPKVQKVGPHIEGVVVDGANGVGAKKLYTLQQFLEGIEVNIRNSGREGEGGLNDSVGADFVQKEKITPSGFGGDDVGKGVQAWMVMQTD*

Protein Length: 273

Fln nts: CAGGCATCAGGTTTGCTTATGGGACAGCAGGGTTTCGATACAATGGATTGCTTTTGTCGTCGACCATATTCAGGGTTGGTGTTTTGGCTGCTCTGAGGTCATTGAAAACTGGATCTGTTACTGGATTAATGATCACAGCCTCACATAATCCAGAATCTGACAATGGTGTGAAGGTGGCAGATCCAGGAGGTGGCATTTTGACCCAGGAATGGGAGCCCTTTGCGGATGCCATCGCAAATGCTGTCAATGCAGAGAATTTTGTACAGCTGATTGATGAGTTCATCAAAAAGCAAGGCATCTTATGTGGxxxxxxxxxxxxxxxxxxxxxGGTACTTGTGGCAAGAGACACAAGACCTAGTGGAGAAGAGCTACTGAGTGCTGCTATTCAAGGCATTGGGGCTGTAAAAGGAGTGATGACAGTTGACATGGGTATCTTGACTACTCCACAACTTCACTGGATGGTCCGTAGTAGAAACAAAGGCATGCCAGCAACAGAATCTGATTATTATGTGCAGCTTTCAAGTTCAGTCAAGATTCTTATGGAAACAAGCCCTAAAGTGCAGAAGGTGGGACCCCATATTGAAGGAGTGGTGGTAGATGGAGCAAATGGAGTAGGTGCAAAAAAGTTGTATACATTACAGCAATTTTTGGAGGGTATTGAAGTGAATATCAGGAACTCTGGCAGGGAAGGTGAGGGAGGGCTCAATGATAGTGTTGGGGCTGACTTTGTGCAGAAGGAGAAGATCACTCCCAGTGGATTTGGAGGGGATGATGTTGGAAAAGGTGTGCAAGCTTGGATGGTGATGCAGACAGACTAGTTTATTTCTATATCTCCT

Fln Alignment:

Contig6636___GIRFAYGTAGFRYNGLLLSSTIFRVGVLAALRSLKTGSVT-GLMITASHNPESDNGVKVADPGGGILTQEWEPFADAIANAVNAENFVQLIDEFIKKQGILCGxxxxxxxVLVARDTRPSGEELLSAAIQGIGAVKGVMTVDMGILTTPQLHWMVRSRNKGMPATESDYYVQLSSSVKILMETSPKVQKVGPHIEXXXXXXXXXXXXKKLYTLQQFLEGIEVNIRNSGREGEGGLNDSVGADFVQKEKITPSGFGGDDVG
P57750_________________GVKLSYGTAGFRGDAKLLESTVYRVGILSALRSLKLGSATVGLMITASHNKVSDNGIKVSDPSGFMLSQEWEPFADQIANASSPEELVSLIRKFMEKEEIAIGxxxxxxxVWLGRDTRPSGESLLRAGEIGVGSILGSVAIDIGILTTPQLHWMVRAKNKGLKATENDYFENLSTSFRCLIDLIPSSGNDKLEISKLLVDGANGVGGQKIEKLRGSLSNLDVEIRNTGRDG-GVLNEGVGADFVQKEKVLPVGFGFKDVG

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
249	20		80		0.995493
252			80	20	0.995493
253	80			20	0.995493
312		83		16	0.994512
314		83		16	0.994512
319	33			66	1.0
323			66	33	1.0
500	33		66		0.997452
587			80	20	0.995493
729	25			75	0.996473
730	25		75		0.996473
733		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain