SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6627

Length: 1832 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6627

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5190	40/40

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartokinase n=1 Tax=Picea sitchensis RepID=A9NUI1_PICSI	-	-	93%
FL-Next	sp=Aspartokinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	aspartokinase chloroplastic-like	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aspartate kinase.	EC:2.7.2.4	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Glycine, serine and threonine metabolism	00260	86%
Blast2go	Cysteine and methionine metabolism	00270	86%
Blast2go	Lysine biosynthesis	00300	86%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	86%
Blast2go	Biosynthesis of plant hormones	01070	86%
Blast2go	Metabolic pathways	01100	86%
Blast2go	Biosynthesis of secondary metabolites	01110	86%

Source	GOs	Term	Type	Identity
Blast2go	cellular amino acid biosynthetic process	GO:0008652	Biological Process	86%
Blast2go	phosphorylation	GO:0016310	Biological Process	86%
Blast2go	aspartate kinase activity	GO:0004072	Molecular Function	86%
Blast2go	amino acid binding	GO:0016597	Molecular Function	86%

Source	InterPros	Term	Type	Identity
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Aspartate/glutamate/uridylate kinase	IPR001048	-	-
Sma3	Aspartate kinase domain	IPR001341	-	-
Sma3	Aspartate kinase, conserved site	IPR018042	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUI1

Fln msg: your sequence is shorter than subject: 502 - 568

Fln protein: MFIRSENVNVAVVEKSENVQNKSGEPEFTCVMKFGGSSVASAERMKEVADLVLSFDQERPLVVLSAMGKSTNNLLQAGERAVTCGIAMVPKIKELDFIKELHLRTVKELGIDESYSELLQECEQLLTGIALMKELTPRTKDYLVSFGERLSTRIFAAYLNKIGVKARQYDAFDIGFITTDEFTSADILEATYPAVEKRLRSDWQKDPAIPIVTGFLGKGWKTNAVTTLGRGGSDLTATAIGKALGLREIQVWKDVDGVLTCDPNIYQKAEPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPQAPGTLITRTRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLARVFSIFEELGISVDVVATSEVSISLTLDPSKLWERELIKQELDRMVEELEKVAVVNLLQNRSIISLIGNIQYSSLILEKVFCVFRTLGVNVQMISQGASKVNISLIVNDIEAESCVKALHSTFFDEGDLLSIKSNMNGASHC*

Protein Length: 503

Fln nts: AATGTTTATCAGAAGCGAGAACGTTAATGTAGCCGTGGTGGAGAAGTCTGAAAATGTTCAGAATAAGAGCGGCGAGCCAGAGTTTACTTGTGTGATGAAATTTGGCGGTTCTTCTGTGGCGTCAGCTGAGAGAATGAAGGAAGTTGCAGATCTCGTTCTCAGCTTCGATCAAGAAAGACCCCTTGTGGTTTTATCTGCAATGGGGAAGAGCACTAATAACCTCCTCCAGGCTGGGGAGAGAGCAGTCACCTGTGGTATAGCAATGGTTCCTAAAATTAAGGAGTTAGACTTCATAAAGGAGCTACATTTAAGAACTGTCAAGGAGCTTGGAATCGATGAGTCATATTCAGAGCTATTGCAGGAGTGTGAGCAACTTCTAACTGGAATTGCCCTGATGAAAGAGTTGACGCCTCGTACAAAAGATTACCTAGTTTCATTTGGGGAGCGCTTGTCAACAAGGATATTTGCTGCATATCTAAATAAGATTGGTGTGAAAGCACGGCAGTATGATGCCTTCGATATTGGATTTATCACCACTGATGAGTTCACTAGTGCTGATATTTTGGAGGCAACATATCCTGCTGTTGAGAAAAGATTACGTAGTGACTGGCAAAAGGATCCAGCAATTCCCATTGTGACTGGATTCCTTGGGAAGGGTTGGAAGACCAATGCTGTGACTACCTTGGGTAGGGGTGGAAGTGACCTGACTGCAACAGCTATTGGCAAGGCCTTAGGCCTGAGAGAGATTCAGGTATGGAAGGATGTGGATGGGGTACTGACATGTGATCCAAACATCTATCAAAAAGCAGAACCTGTGCCGTATTTGACCTTTGATGAAGCTGCAGAGCTTGCTTATTTTGGTGCTCAGGTTTTGCATCCACAATCAATGCGGCCTGCAAGAGAGGGTGACATTCCTGTTAGAGTAAAGAATTCTTACAACCCACAAGCTCCAGGCACACTTATTACGAGAACAAGGGATATGAGCAAAGCAGTGCTGACAAGTATAGTGTTGAAACGAAATGTTACAATGCTTGATATTGTAAGCACACGCATGCTAGGTCAATATGGGTTCCTGGCGAGGGTTTTCTCTATTTTTGAAGAATTAGGTATATCAGTTGATGTTGTTGCTACTAGTGAAGTCAGTATTTCCCTCACATTAGACCCATCGAAGCTGTGGGAAAGAGAACTCATCAAGCAGGAGCTGGACCGAATGGTAGAAGAGCTTGAAAAAGTTGCTGTTGTTAATCTTCTACAGAATAGATCCATCATTTCTTTGATTGGAAATATTCAGTACTCCTCTCTTATACTGGAAAAGGTATTCTGCGTGTTTAGAACTCTTGGTGTAAATGTACAAATGATTTCTCAAGGAGCATCCAAGGTGAATATTTCTTTGATTGTCAATGACATTGAAGCAGAGTCTTGTGTCAAGGCACTTCATTCTACATTCTTTGATGAAGGGGATCTTTTAAGTATTAAAAGTAATATGAATGGAGCTAGTCACTGCTGA___CTTGGAAGAATTGGTCACTGCTGTAAAGGACCAAAGGTTTGCTAGCAGCCTAACATAACATAAGATGGGCTCTCGGATTCAGCAGCACCATGAACAAACGTCAAAGCTTACAATTCTTAGGAAAGATCCTTTTCAAAAATTTCTGTTAATTCTACATGTTTCCTAATCAATCTCTTTGCCTGGTGTTCATTTTGTTGGCATCAAGCAAAATTTTGGAACACTATATTTTATTCAAGAATCAAGTTGCAAGGCAGGTGTTGGTATATAAAACGATTCTTTGAAGGAACTTGAGATGCAGCGTATGAAATATTGCTCCATTTCACCC

Fln Alignment:

Contig6627___IRSENVNVAVVEKSENVQNKSGEPEFTCVMKFGGSSVASAERMKEVADLVLSFDQERPLVVLSAMGKSTNNLLQAGERAVTCGIAMVPKIKELDFIKELHLRTVKELGIDESY-SELLQECEQLLTGIALMKELTPRTKDYLVSFGERLSTRIFAAYLNKIGVKARQYDAFDIGFITTDEFTSADILEATYPAVEKRLRSDWQKDPAIPIVTGFLGKGWKTNAVTTLGRGGSDLTATAIGKALGLREIQVWKDVDGVLTCDPNIYQKAEPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPQAPGTLITRTRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLARVFSIFEELGISVDVVATSEVSISLTLDPSKLWERELIKQELDRMVEELEKVAVVNLLQNRSIISLIGNIQYSSLILEKVFCVFRTLGVNVQMISQGASKVNISLIVNDIEAESCVKALHSTFFDEGDLLSIKSNMNGASHC
A9NUI1_________________IRSESIGVAVVEKSENVQKKSDEPEFTCVMKFGGSSVASAERMKEVADLILSFDQERPLVVLSAMGKSTNNLLQAGEKAVTCGIAMVPDIKELEFIKELHLRTVKELGIDESIISELLQECEQLLTGIALMKELTPRTKDYLVSFGERLSTRIFAGYLNNIGVKARQYDAFDIGFITTDEFTSADILEATYPAVEKRLRSDWQKDPAIPIVTGFLGKGWKTSAVTTLGRGGSDLTATAIGKALGLREIQVWKDVDGVLTCDPNIYPKAEPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPQAPGTLITRTRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQFGFLARVFSIFEELGISVDVVATSEVSISLTLDPSKMWERELIKQELDRMVEELEKVAVVKLLQNRSIISLIGNIQYSSLILEKVFCVFRTLGVNVQMISQGASKVNISLIVNESEAESCVKALHSTFFDEGDLLNIKSDTNGASCC

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
848	20		80		0.995493
1036		25	75		0.996473
1037	25	75			0.996473
1142		25		75	0.996473
1144			75	25	0.996473
1324	75	25			0.996473
1325	25		75		0.996473
1326			75	25	0.996473
1347	16	83			0.994512
1348	16			83	0.994512
1501			83	16	0.994512
1599	14		85		0.993533
1600		85		14	0.993533
1601	85		14		0.993533
1602			85	14	0.993533
1617	14		85		0.993533
1621	85			14	0.993533
1622	85			14	0.993533
1637	16		83		0.994512
1638		16	83		0.994512
1640	83			16	0.994512
1641	83			16	0.994512
1695	25		75		0.996473
1697	25	75			0.996473
1699			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain