SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6614

Length: 1287 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6614

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22045	30/30

Source	Descriptions	Term	Type	Identity
AutoFact	PPPDE putative thiol peptidase family protein [Arabidopsis thaliana] dbj\|BAA97165.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAO64931.1\| At5g47310 [Arabidopsis thaliana] dbj\|BAE99462.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED95497.1\|	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	erebp-4 like protein	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF862, eukaryotic	IPR008580	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKJ1

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MRPITSDSDSNSSSRAQLYLNVYDLTPLNNYMYWFGVGIFHSGIEAHGVEYAFGAHDYPTSGVFEVEPKSCPGFIFRRSVQLGNVNMSPLEFRQFVEHMAGSYNGDSYHLIAKNCNHFTDDISRRLTGKSIPGWVNRLARIGSFCNCLLPESIQVTAVRHTPEYQGLSEDGSESRSTEGGIESDGEQDHHLLIPSNGEADSMEREALWETPLKHIKEIL*

Protein Length: 221

Fln nts: GCTTCACGGTCATTTTTGGCTGTATTTGAATAAAAATCAGAATCTACATTTACTGTACAGTGTCGTTTAACCTCCTGTTGATGGATCAGAGATGCATCTCAGGAATGTCATGGATCTGAGTATTCACAATTGAATTTTATTGCTGACTGACCGGTGCTCCAGTGGCGGCTGCTGCTGGTAACCTGTTCGACTTTTCTCATAGGTTCTTTGGCTTCGTTCTGTGACAGGCAGAGCAGTTTCAGGTCTCTGCCAATCTCTGATGCTGGAACTCTTCGATTTCTCTCATAGGCTATCTGTCTCTTTCTGTGATAGGCAGAATAGTTTCAGATTTGGGTGGGTTATGGGGAGCCCTTAAGGAGACAAATGAAGTGGAAATAGCCATTCATGTTTAGAGGAAAGGAGCACAGTGCATTCTGAAGGCTGAACA_-_ATGAGACCGATTACTTCAGATTCTGATTCCAACAGCAGCAGCCGAGCTCAACTATATTTGAATGTCTATGATCTGACCCCTTTGAACAACTATATGTACTGGTTTGGCGTCGGCATCTTTCACTCTGGGATTGAAGCTCATGGTGTGGAATATGCTTTTGGAGCACATGATTACCCTACTAGTGGAGTATTTGAAGTGGAACCCAAGAGTTGTCCGGGTTTTATATTCAGGCGCTCTGTTCAATTGGGCAATGTAAATATGTCTCCACTTGAATTCCGACAGTTCGTTGAACATATGGCAGGCAGTTACAATGGTGATTCCTATCATCTCATTGCAAAGAATTGCAATCATTTTACTGATGATATAAGTAGGCGTTTGACAGGAAAGTCCATACCAGGTTGGGTAAACCGACTTGCAAGAATAGGTTCCTTCTGCAACTGTTTGTTGCCAGAAAGTATTCAGGTAACAGCTGTAAGGCATACGCCAGAATATCAAGGGTTGTCAGAAGATGGGTCAGAATCCAGATCAACTGAAGGCGGAATAGAGAGTGATGGGGAGCAAGATCATCATCTTCTAATTCCTTCCAATGGAGAGGCTGACTCAATGGAAAGGGAAGCATTATGGGAAACACCCTTGAAACATATCAAGGAGATCTTGTAAATTTATACCCCGAGCATGTGTTTGCAGTTCATTAGGGAATACAGTATATTCTTTCTGGTTCGTAATCTTTCTGCTGCTCCGTTTCTTCTATACTGAAGTTAGTGCATATCAATTACTTGGTATGGCCTTATTTTCATGGTAAAGCTATTACTTGGGTTAAAGTTTCACAGCACTGCAGCTTGTTCCATTTCTTATACATT

Fln Alignment:

Contig6614___RAQLYLNVYDLTPLNNYMYWFGVGIFHSGIEAHGVEYAFGAHDYPTSGVFEVEPKSCPGFIFRRSVQLGNVNMSPLEFRQFVEHMAGSYNGDSYHLIAKNCNHFTDDISRRLTGKSIPGWVNRLARIGSFCNCLLPESIQVTAVRHTPEYQGLSEDGSESRSTEGGIESDGEQDHHLLIPSNGEADSMEREALWETPLKHIKEIL
A9NKJ1_________________RAQLYLNVYDLTPLNNYMYWFGVGIFHSGIEAHGVEYAFGAHDYSSSGVFEVEPKSCPGFIFRRSVSLGTLNMSPFEFRQFVEHMAGSYNGDSYHLIAKNCNHFTDDISKRLTGKSIPGWVNRLARIGSFCNCLLPESIQVTTVRHTPEYQGLSEDGSESRSTEGEIESDGEQD-HLLISSNGEAESIERDILWETPLKHIKEIL

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
258		75	25		0.996473
317	25	75			0.996473
439		20	80		0.995493
441		80		20	0.995493
442		80		20	0.995493
665	11		88		0.923564
667	11		88		0.923564
668		88		11	0.923564
687	10		90		0.90298
736	11		88		0.923564
755	12	87			0.992554
756		12		87	0.992554
759		85		14	0.993533
771	83			16	0.994512
772	83			16	0.994512
823	33	66			0.997452
827	66			33	0.997452
921		25	75		0.996473
923	75			25	0.996473
966		66		33	0.997452
998	33		66		0.997452
1001		66	33		0.997452
1002	66			33	0.997452
1101	25			75	0.996473
1102		25		75	0.996473
1105	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain