SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6546

Length: 1715 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6546

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19347	40/41

Source	Descriptions	Term	Type	Identity
AutoFact	AMSH-like ubiquitin thiolesterase 1 [Arabidopsis thaliana] sp\|Q8VYB5.1\|AMSH1_ARATH RecName: Full=AMSH-like ubiquitin thiolesterase 1; AltName: Full=Deubiquitinating enzyme AMSH1 gb\|AAL60033.1\| unknown protein [Arabidopsis thaliana] gb\|AAM20241.1\| unknown	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	amsh-like ubiquitin thiolesterase 1-like	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	protein desumoylation	GO:0016926	Biological Process	67%
Blast2go	protein deneddylation	GO:0000338	Biological Process	67%
Blast2go	modification-dependent protein catabolic process	GO:0019941	Biological Process	67%
Blast2go	positive regulation of vacuole organization	GO:0044090	Biological Process	67%
Blast2go	protein K63-linked deubiquitination	GO:0070536	Biological Process	67%
Blast2go	endocytosis	GO:0006897	Biological Process	67%
Blast2go	protein K48-linked deubiquitination	GO:0071108	Biological Process	67%
Blast2go	positive regulation of intracellular protein transport	GO:0090316	Biological Process	67%
Blast2go	protein binding	GO:0005515	Molecular Function	67%
Blast2go	integral to membrane	GO:0016021	Cellular Component	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	JAB1/Mov34/MPN/PAD-1	IPR000555	-	0.0	-
Sma3	Ribosomal protein S1, RNA-binding domain	IPR003029	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NR98

Fln msg: Overlapping hits, possible frame ERROR between 1427 and 1421, your sequence is longer than subject: 500 - 118

Fln protein: MSLRYYYRIADNMLKQANIYREEKNLIDLYIILLRFSSLITETIPHHQDYQTSYPKEKAEYRKKLLNVVSELEALKPVVQRQVDELNKTYASSSSSRGASDASLEWPPRRNQVFLTYENEKEGYGSIGANGTSQNSWKANGLSRDRWLSSNRIEDRFNKLTFSIPPPKEETLSRHSLLGPNGLRGQWQAPISGTRVQYPSHGDLTPIEIPSFEQTGQNNLPIIEAGSLSTSQSTGPELFPSLEANSTPQVNELSSLSTYGSVETSIIPNIVRQPSPPPVLAPVQNLAAGLDALTHVSHLNVADPRPGPAKLLQDDLAKSKSPQNVQISVKMMDEFMNLAKSNTQKNLETCGVLAGSLKKRTFFVTTLIIPKQESTSDSCQTMNEEEIYDVQDKRSLFPLGWIHTHPSQNCFMSSVDLHTHYSYQVMLPEAIAIVMAPTDxxxxYGIFHLSDPAGVNVIKQCQQRGFHPHEEPPDGSPIYEHCSHVYLNSNLRYDVIDLR*

Protein Length: 501

Fln nts: ATGATCGCCTTCGCGTGCCACTGAGAACATGAAGATGAGGGCGCCTTCCAAAATGTTGAGTATAGCCGCCAGCACCCAGGAAAGTCGATGTCGACAATCGC_-_ATGTCCCTCAGATATTACTACCGGATTGCTGATAATATGCTCAAACAGGCGAACATATATAGGGAAGAGAAGAATCTTATTGACTTGTACATTATACTTCTGCGATTTTCAAGTTTAATCACAGAAACTATACCACATCATCAAGACTATCAAACATCCTATCCAAAGGAGAAGGCAGAGTACAGAAAGAAACTATTGAATGTTGTGAGTGAGCTGGAAGCACTAAAACCAGTGGTGCAACGACAAGTTGATGAACTGAACAAAACATATGCCAGTTCATCCTCTTCCAGAGGAGCTAGTGATGCTTCTTTGGAGTGGCCTCCCCGCAGGAACCAAGTTTTTCTAACCTATGAAAATGAGAAGGAGGGTTATGGGAGCATTGGAGCGAATGGTACATCGCAAAATTCATGGAAGGCTAATGGTCTTAGCAGGGATCGGTGGCTATCCTCTAACCGAATTGAAGACCGGTTCAACAAGCTAACTTTTTCTATACCTCCACCAAAGGAAGAAACATTATCAAGACACTCCTTGCTAGGACCAAATGGACTCCGTGGTCAATGGCAAGCACCCATTAGTGGTACAAGGGTGCAATATCCCAGCCATGGTGATTTGACTCCAATTGAAATACCAAGCTTTGAACAAACTGGACAAAATAATCTTCCAATAATAGAGGCAGGCAGTTTGTCTACATCTCAAAGCACTGGACCAGAATTATTTCCTTCATTGGAAGCTAATTCAACGCCTCAAGTGAATGAGTTGTCATCTCTTTCCACATATGGCTCCGTTGAGACTTCTATTATTCCAAATATTGTGAGACAACCTTCTCCTCCGCCTGTCCTTGCTCCTGTACAAAACTTAGCTGCTGGACTGGACGCATTGACGCATGTTTCTCATTTGAATGTGGCTGATCCTAGACCTGGACCTGCAAAATTGTTACAAGATGATCTGGCAAAGTCTAAAAGTCCGCAAAATGTACAAATTTCAGTTAAAATGATGGATGAGTTCATGAACCTTGCCAAGTCCAATACTCAAAAAAATTTGGAAACATGCGGTGTTCTTGCAGGGTCACTTAAAAAACGAACATTTTTTGTCACAACTCTTATTATTCCAAAGCAGGAATCAACGTCTGATTCATGTCAGACTATGAATGAGGAAGAGATATATGATGTCCAAGACAAGCGTTCTCTTTTCCCTCTTGGATGGATTCATACGCATCCTTCACAGAATTGCTTTATGTCATCGGTTGATCTCCACACTCATTATTCATATCAGGTTATGTTACCTGAAGCTATTGCTATTGTCATGGCTCCCACAGACxxxxxxxxxxxxTATGGTATTTTCCATTTATCAGATCCTGCAGGTGTGAATGTCATAAAACAATGCCAGCAGCGTGGCTTTCATCCTCACGAAGAACCTCCGGATGGTAGCCCAATATATGAACATTGTTCTCATGTCTATCTAAATTCAAATTTAAGATATGATGTGATAGATCTTCGGTGA___TATTATAAGGAGTACAATCATTGAGGTATTTAGCGTCATTTCCTGAAAGCTACCAGTGATTACTTCACTAGTGGTGATCTCTGTTTGATTTCATCCCTATATATTTGTATACATT

Fln Alignment:

Contig6546___MNEEEIYDVQDKRSLFPLGWIHTHPSQNCFMSSVDLHTHYSYQVMLPEAIAIVMAPTDTxxTYGIFHLSDPAGVNVIKQCQQRGFHPHEEPPDGSPIYEHCSHVYLNSNLRYDVIDLR
A9NR98_________________MNEEEIYDVQDKRSLFPLGWIHTHPSQNCFMSSVDLHTHYSYQVMLPEAIAIVMAPTDTxxTYGIFHLSDPSGVNVIKQCQQRGFHPHEEPPDGSPIYEHCSHVYINSNLRYDVIDLR

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
115	25			75	0.996473
118			25	75	0.996473
119	75			25	0.996473
190	20			80	0.995493
192		80		20	0.995493
193	80		20		0.995493
226	16		83		0.994512
227	83			16	0.994512
228	83		16		0.994512
229	83			16	0.994512
299	14			85	0.993533
300		14	85		0.993533
302	85			14	0.993533
306		16		83	0.994512
307	16		83		0.994512
309			83	16	0.994512
366	80			20	0.995493
367	80		20		0.995493
368		80		20	0.995493
585		25		75	1.0
591		12		87	0.992554
594	87			12	0.992554
604	85	14			0.993533
606			85	14	0.993533
607			85	14	0.993533
623	14		85		0.993533
624	85			14	0.993533
625		85	14		0.993533
626	85			14	0.993533
667			90	10	0.90298
668		90	10		0.90298
669	90			10	0.90298
677	16		83		0.999991
680	8		75	16	0.99999
736	10			90	0.90298
815		12		87	0.992554
832			87	12	0.992554
833		87	12		0.992554
921	88			11	0.923564
922		88		11	0.923564
1016		11	88		0.923564
1019		88		11	0.923564
1051	16		83		0.994512
1099		16	83		0.994512
1102			83	16	0.994512
1617	33			66	0.997452
1618		33	66		0.997452
1619	33			66	0.997452
1620	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain