SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6544

Length: 1332 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6544

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17780	16/31
SustainPine v2.0	sp_v2.0_unigene22162	15/31

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nuclear transcription factor Y subunit C-1 [Arabidopsis thaliana] sp\|Q9SMP0.1\|NFYC1_ARATH RecName: Full=Nuclear transcription factor Y subunit C-1; Short=AtNF-YC-1; AltName: Full=Transcriptional activator HAP5A emb\|CAB62348.1\| transcription factor Hap5a [	-	-	7.0e-38	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	protein	-	-	0.0	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	87%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor CBF/NF-Y/archaeal histone	IPR003958	-	0.0	-
Sma3	Histone-fold	IPR009072	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUT0

Fln msg:

Fln protein: MEGKYPHLQSSATPPVSHGPSSLMHNSFFQQQQPQMPLQHHQQQLQGLMQPHLHYMQIQKQQLQMFWQQQMQEMEQVAEFKQHQLPLARIKKIMKSDEDVKMISAEAPVLFSKACELFILELTLRSWLHTEENKRRTLQRNDIAGAISRGDVLDFLLDIVPRDEVKDEEYGGHWTGIPHAEPMSYGGIHYPLMHAQPYNHNFNPDVMAAQQTMSQQLMSQQPLMPDQPLMYQPPQQ*

Protein Length: 238

Fln nts: AATGTAGGGATACAAAGCCCTGTTATTTGCTATACGCTTTCTGTATGTATGAAGCTCTGTAGGTCAGGCACCTACGTATGCACATATTCCATTGTCATCGGGTATAAAATACTGTGTTGCTGCCCAAAATCGGTCTCATTCATCTCGAGGAAGAGGTACTAAGGTTAACTGCCTCTGTAAGGAGCTTTTAGGGTTGTGATCTCTATCGTTTCACTTCA_-_ATGGAAGGCAAGTACCCACATCTTCAAAGCTCAGCAACACCACCTGTTTCTCATGGACCATCAAGCTTGATGCATAATTCGTTCTTCCAGCAACAGCAGCCACAGATGCCTCTGCAACATCACCAGCAGCAGCTACAGGGCTTAATGCAGCCTCATCTCCATTACATGCAGATCCAGAAACAGCAGCTGCAGATGTTTTGGCAACAGCAGATGCAAGAGATGGAACAAGTTGCAGAGTTTAAGCAGCATCAACTTCCTCTTGCCAGAATTAAGAAAATAATGAAATCTGATGAAGATGTGAAGATGATAAGTGCTGAAGCTCCTGTCCTATTCTCAAAGGCATGCGAGCTTTTCATTTTGGAGCTTACATTACGTTCATGGTTACATACTGAAGAGAACAAAAGACGTACTTTGCAGAGAAACGATATTGCAGGAGCTATAAGTAGGGGTGATGTTCTTGATTTTCTTCTTGATATTGTTCCTAGAGATGAAGTCAAGGATGAGGAATATGGAGGACACTGGACTGGGATTCCTCATGCAGAACCTATGTCTTACGGAGGAATACACTATCCACTCATGCATGCTCAGCCTTACAATCACAATTTTAACCCTGATGTGATGGCTGCTCAACAAACAATGTCTCAGCAATTAATGTCACAGCAGCCTTTAATGCCAGACCAGCCGTTGATGTACCAACCTCCGCAGCAATGA___TCGTGAGGTTGAGTGGAGGCCAGAAACTATCAATTTAGAATGATCGGGCTTATTGCTCAAGAGCCTAGATAGCATCTTCAGAACAGCTAGATCTTCTCAGATACAGTATTTGCTGATGAGATACAGCCGGGGTGATATATTTATATTGGTTGGTCCCTTACATATTATCAGATACTAAGGCTGATCAGTACTCTGGTCTTGTTATGCCTAGCTATATTTTGACAAAATAAGTGTTTATTAAAAATCTTTTCATGGCCACCAGATGGATTAATCATTTATGCTTTTTTGAAAGGATGAAAACGAGGGTTTGGCTATAAGGCACAGAAAATACAATCAAGAATGGAATATAAACAAATTTCTGCTTTAGAGGATTTGAACATGAATAAGATAAGAGTTAAACATT

Fln Alignment:

Contig6544___MEGKYPHLQSSATPPVSHGPSSLMHNSFFXXXXXXXXXXXXXXXXXXXXXXXXXYXXXXXXXXXXXXXXXXXXXXXVAEFKQHQLPLARIKKIMKSDEDVKMISAEAPVLFSKACELFILELTLRSWLHTEENKRRTLQRNDIAGAISRGDVLDFLLDIVPRDEVKDEEYGGHWTGIPHAEPMSYGGIHYPLMHAQPYNHNFNPDVMAA
A9NUT0_________________MEGKYPHLQSSPSPSVSHGPSSLMHNSIFQQQQPQMPMQHHQQQLQGSMQPHLHYMQIQKQQLQMFWQQQMQEMEQIAEFKQHQLPLARIKKIMKSDEDVKMISAEAPVLFSKACELFILELTLRSWLHTEENKRRTLQRNDIAGAISRGDVLDFLLDIVPRDEVKDEEYGGHWPGIPHAESMSYGGIHFPLMHAQPYHHNLNPDVMTA

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
205	14			85	0.993533
208		85		14	0.993533
227	14		85		0.993533
231			85	14	0.993533
235	16	83			0.994512
236		83		16	0.994512
237	83			16	0.994512
278	16	83			0.994512
280			50	50	1.0
281		83	16		0.994512
282	83			16	0.994512
298	16			83	0.994512
300	16		83		0.994512
301		33		66	1.0
342		60		40	1.0
354	62		37		1.0
514		25	75		0.996473
540		33		66	0.997452
563	33		66		0.997452
662	16		83		0.994512
666			83	16	0.994512
718		16	83		0.994512
721			83	16	0.994512
732		20	80		0.995493
734			80	20	0.995493
735			80	20	0.995493
979	33		66		0.997452
982			33	66	0.997452
1038	12			87	0.992554
1041			12	87	0.992554
1059		62		37	1.0
1086	12	87			0.992554
1088	12	87			0.992554
1092		50		50	1.0
1286	66		33		0.997452
1289	33			66	0.997452
1293			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain