SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6534

Length: 494 nt

UniGene Fasta

>biog3_v1.0_unigene6534
TGCAAAGGGACGCATTCAACTGTGATGGATGTGATGAAGAAGGAAGTGCATGGTCTTATTATTGCAAAATATGTGAGTATGATCTTCATCTGACTTGTGCTTTAAAGGATCAACAGGGTCCCCAGAAACCATGACAAGCAACAGGACACAGATGCTACTACTGATGAAAACTGCAAGCCAGCTTGAGTAATCTGTGATGGAGATATTTGTTATAGGGTCTAGGCCTAATGATATTGGTGTCTTATCACCAGGTTGGACTATCATTATAGCTGCCTGCACTAATCAACACTGTTGCCGCTAGCTTCACAGAGTTTTACATTTCTTACACAAATCTTTCATGAACAATGAAAACTCCTTTGTCGTATGGCTAATAGTTTTATAAAAATCTACAGTAAACAATGTGAGATAAAAGAGGCTTTAGAATTGTCTTGCCCATATTATTTCAAGGTTTGAGAATTGAATGCAGGCAGCAGCCACCCATGATGTAAAACATT

Ace file of the UniGene biog3_v1.0_unigene6534

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4012	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleoredoxin, putative n=1 Tax=Ricinus communis RepID=B9SHA0_RICCO	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	probable nucleoredoxin 1-like	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-disulfide reductase.	EC:1.8.1.8	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	73%
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	73%
Blast2go	regulation of pollen tube growth	GO:0080092	Biological Process	73%
Blast2go	pollen tube guidance	GO:0010183	Biological Process	73%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	73%
Blast2go	protein-disulfide reductase activity	GO:0047134	Molecular Function	73%
Blast2go	antioxidant activity	GO:0016209	Molecular Function	73%

Source	InterPros	Term	Type	Identity
Sma3	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	-
Sma3	C1-like	IPR011424	-	-
Sma3		IPR017936	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKG4

Fln msg: Overlapping hits, possible frame ERROR between 122 and 121, your sequence is shorter than subject: 62 - 586

Fln protein: QRDAFNCDGCDEEGSAWSYYCKICEYDLHLTCALKDQQGxxRNHDKQQDTDATTDENCKPA*

Protein Length: 63

Fln nts: TGCAAAGGGACGCATTCAACTGTGATGGATGTGATGAAGAAGGAAGTGCATGGTCTTATTATTGCAAAATATGTGAGTATGATCTTCATCTGACTTGTGCTTTAAAGGATCAACAGGGTxxxxxxAGAAACCATGACAAGCAACAGGACACAGATGCTACTACTGATGAAAACTGCAAGCCAGCTTGAGTAATCTGTGATGGAGATATTTGTTATAGGGTCTAGGCCTAATGATATTGGTGTCTTATCACCAGGTTGGACTATCATTATAGCTGCCTGCACTAATCAACACTGTTGCCGCTAGCTTCACAGAGTTTTACATTTCTTACACAAATCTTTCATGAACAATGAAAACTCCTTTGTCGTATGGCTAATAGTTTTATAAAAATCTACAGTAAACAATGTGAGATAAAAGAGGCTTTAGAATTGTCTTGCCCATATTATTTCAAGGTTTGAGAATTGAATGCAGGCAGCAGCCACCCATGATGTAAAACATT

Fln Alignment:

Contig6534___QRDAFNCDGCDEEGSAWSYYCKICEYDLHLTCALKDQQGxRNHDKQQDTDATTDENCKPA*VICDGDICYR
B8LKG4_________________QRPVFVCDGCNKDGSAWSYYCKKCDYDLHLPCALKDQQDxGNQEKGQNTDNAVDENCKPAGVICDGDVCYK

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
200	20		80		0.995493
201		20	80		0.995493
203			80	20	0.995493
204	80			20	0.995493
276			80	20	0.995493
293		75		25	0.996473
386	33		66		0.997452
387	66	33			0.997452
389	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain