SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6532

Length: 1524 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6532

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17094	53/53

Source	Descriptions	Term	Type	Identity
AutoFact	Sucrose-phosphatase n=2 Tax=Pinaceae RepID=Q850K9_PINTA	-	-	97%
FL-Next	tr=Sucrose-phosphatase; Pinus taeda (Loblolly pine).	-	-	97%
Blast2go	sucrose phosphate phosphatase	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	HAD-superfamily hydrolase, subfamily IIB	IPR006379	-	-
Sma3	Sucrose-6-phosphate phosphohydrolase C-terminal	IPR013679	-	-
Sma3	Sucrose phosphatase, plant/cyanobacteria	IPR012847	-	-
Sma3	Sucrose-phosphate synthase	IPR006380	-	-
Sma3	Sucrose-phosphate phosphatase	IPR006378	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q850K9

Fln msg:

Fln protein: MEGLKESSPRLMIVSDLDNTMVDHHDPENISLLRFNALWEADYRHDSLLVFSTGRSPTLYKELRKEKPLLTPEITIMSVGTEITYGDSMSPDKGWEEVLNQGWDRDTVVEEASRFPQLKFQVETEQRPHKVSFFIEKTKSSEVINALSKQLEERQLDVKIIYSGGIDLDILPQGAGKGQALAYLLKKFNSEGKSPQNTLVCGDSGNDAELFSVADVYGVMVGNAQEELLQWYEENAKSNPKVILAHERCAAGIIQAMQHFNLDPNVSPRDIVGLSQTGAKYFLLGHEIVEFHLLCERWRRAEVEDSNEIFQRFKSAIDPNCSLLHPWGVEENLFTSIDLLRQCYGDQKGKQFRIWIDRIRPLKISSDIWLVRFDKWELIEQERRCCCTTALLKVKPDAPNSLSWIHIHETWLDGCGSRTNLCCSI*

Protein Length: 427

Fln nts: CGGGGGTGTTGAATTGCAGAGCAGACG_-_ATGGAGGGATTGAAGGAATCTTCACCGCGTTTGATGATCGTGTCGGACCTCGACAATACCATGGTGGATCATCATGATCCAGAGAATATATCATTGCTTCGGTTCAATGCATTATGGGAAGCAGACTACAGGCACGATTCCCTCTTGGTTTTCTCTACAGGAAGATCTCCAACATTGTACAAAGAGCTGAGAAAGGAGAAACCTTTGCTGACACCAGAAATCACCATAATGTCTGTTGGAACAGAGATAACATATGGAGATTCGATGAGCCCTGATAAGGGCTGGGAGGAAGTGCTGAATCAAGGGTGGGACAGAGACACTGTGGTAGAAGAGGCGTCTAGATTCCCTCAGCTTAAGTTTCAGGTAGAGACAGAGCAGCGACCCCACAAAGTTAGCTTTTTTATTGAGAAGACAAAGTCTTCAGAAGTGATTAATGCCCTTTCTAAACAATTAGAAGAGCGTCAGTTGGATGTCAAAATCATATATAGTGGAGGCATTGATCTGGACATACTGCCACAAGGTGCTGGTAAAGGACAGGCTTTAGCATATTTGCTGAAGAAATTCAATTCTGAGGGTAAATCACCGCAGAATACTCTTGTCTGTGGAGATTCTGGCAATGATGCAGAATTGTTCAGCGTTGCAGATGTGTATGGAGTCATGGTTGGTAATGCGCAAGAAGAGTTATTGCAGTGGTATGAGGAAAATGCCAAGAGCAATCCTAAAGTTATCCTTGCACATGAGAGATGTGCTGCAGGCATCATACAGGCCATGCAACACTTCAATTTAGACCCCAATGTTTCCCCTCGAGATATTGTAGGGCTCTCCCAAACTGGGGCAAAATACTTTTTACTTGGTCATGAGATTGTGGAATTCCATCTATTGTGTGAGAGATGGCGCCGGGCAGAAGTTGAAGATTCAAATGAGATATTCCAGCGGTTTAAAAGTGCAATTGATCCTAACTGTAGCTTGCTGCATCCATGGGGAGTTGAAGAAAATCTTTTCACAAGCATTGATCTTCTAAGACAGTGTTATGGAGACCAGAAAGGAAAACAATTTCGAATTTGGATTGATAGAATTCGTCCATTGAAAATCTCTTCGGATATTTGGCTTGTGAGGTTTGATAAGTGGGAACTGATTGAACAGGAACGACGTTGCTGCTGCACGACTGCTTTACTCAAAGTGAAGCCTGATGCTCCAAATTCATTGTCATGGATTCACATTCATGAAACGTGGCTTGATGGATGTGGAAGCAGAACTAATCTGTGTTGTTCAATCTAA___AGGAGCTGCTGGATACCACTCAAGCTCTGGTTCTGAGCTGTGATGCTATGATGGAGCAGTTGTCAGAGGTTGATGTTTTGGTACATTGAGATCCGACAACTTTACTCAGATTTATAGCTTAACTTTTGAAGAATCCTTTCCATGCCCCCCTGTGCAACTATTTAAATGCCATCTATAGGCAATAAATGTTTTTCTGCAGTTTAATGAAAACTATACATT

Fln Alignment:

Contig6532___MEGLKESSPRLMIVSDLDNTMVDHHDPENISLLRFNALWEADYRHDSLLVFSTGRSPTLYKELRKEKPLLTPEITIMSVGTEITYGDSMSPDKGWEEVLNQGWDRDTVVEEASRFPQLKFQVETEQRPHKVSFFIEKTKSSEVINALSKQLEERQLDVKIIYSGGIDLDILPQGAGKGQALAYLLKKFNSEGKSPQNTLVCGDSGNDAELFSVADVYGVMVGNAQEELLQWYEENAKSNPKVILAHERCAAGIIQAMQHFNLDPNVSPRDIVGLSQTGAKYFLLGHEIVEFHLLCERWRRAEVEDSNEIFQRFKSAIDPNCSLLHPWGVEENLFTSIDLLRQCYGDQKGKQFRIWIDRIRPLKISSDIWLVRFDKWELIEQERRCCCTTALLKVKPDAPNSLSWIHIHETWLDGCGSRTNLCCSI
Q850K9_________________MEGLKEFSPRLMIVSDLDNTMVDHHDPENISLLRFNALWEADYRHDSLLVFSTGRSPTLYKELRKEKPLLTPEITIMSVGTEITYGDSMSPDKGWEEVLNQGWDRGTVVKEASRFPQLKFQVETEQRPHKVSFYIEKTKSSEVINALSKRLEEHQLDVKIIYSGGIDLDILPQGAGKGQALAYLLKKFNSKGKSPQNTLVCGDSGNDAELFSVADVYGVMVGNAQEELLQWYEGNAKSNPKVILAHERCAAGIIQAMQHFNLDPNVSPRDIVGLSQTGAKYFLLGHEIVEFHLLCERWRRAEVEDSNEIFQRFKSAIDPNCSLLHPWGVEENLFTSIDVLRQCYGDQKGKQFRIWIDRIRPLKISLDIWLVRFDKWELIERERRCCCTTALLKVKPDAPNSLSWIHIHETWLDGCGSSTNLCCSI

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
90	25		75		0.996473
91	25		75		0.996473
94			75	25	0.996473
187			80	20	0.995493
188			80	20	0.995493
192	80			20	0.995493
358	33		66		0.997452
360			66	33	0.997452
362		66		33	0.997452
455	14			85	0.993533
456		14	85		0.993533
529	12	87			0.992554
530	12			87	0.992554
531			87	12	0.992554
533	87			12	0.992554
692	18		81		0.999994
693		18		81	0.999994
695	81			18	0.999994
702	88			11	0.923564
703			88	11	0.923564
714	12		87		0.992554
717			87	12	0.992554
733			83	16	0.994512
772		20		80	0.995493
773	20		80		0.995493
775			80	20	0.995493
923	33		66		1.0
924	33	66			1.0
925			33	66	1.0
926		33	66		1.0
927		33		66	1.0
951	20		80		0.995493
953			80	20	0.995493
954	80		20		0.995493
995	16	83			0.994512
996	16			83	0.994512
1378	10			90	0.90298
1379		10	90		0.90298
1407		75		25	1.0
1409	16			83	0.994512
1410		16		83	0.994512
1412		83		16	0.994512
1438		20	80		0.995493
1441	80			20	0.995493
1443		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain