SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6517

Length: 1293 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6517

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2765	26/28
SustainPine v2.0	sp_v2.0_unigene16470	2/28

Source	Descriptions	Term	Type	Identity
AutoFact	putative glycerol-3-phosphate dehydrogenase [Oryza sativa Japonica Group] gb\|EAY77165.1\| hypothetical protein OsI_05133 [Oryza sativa Indica Group] dbj\|BAG90969.1\| unnamed protein product [Oryza sativa Japonica Group] gb\|EEE55980.1\| hypothetical protein O	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	glycerol-3-phosphate dehydrogenase	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glycerol-3-phosphate dehydrogenase (NAD(P)(+)).	EC:1.1.1.94	-	0.0	92%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerophospholipid metabolism	00564		0.0	92%
Blast2go	Glycerol-3-phosphate dehydrogenase (NAD(+)).	EC:1.1.1.8	-	0.0	92%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerophospholipid metabolism	00564		0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	glycerol-3-phosphate catabolic process	GO:0046168	Biological Process	92%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	92%
Blast2go	NAD binding	GO:0051287	Molecular Function	92%
Blast2go	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity	GO:0047952	Molecular Function	92%
Blast2go	glycerol-3-phosphate dehydrogenase [NAD+] activity	GO:0004367	Molecular Function	92%
Blast2go	glycerol-3-phosphate dehydrogenase complex	GO:0009331	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Glycerol-3-phosphate dehydrogenase, NAD-dependent	IPR006168	-	-
Sma3	Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal	IPR011128	-	-
Sma3	Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal	IPR006109	-	-

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
701	25			75	0.996473
710	16		83		0.994512
711	16		83		0.994512
712			83	16	0.994512
713	83		16		0.994512
714		83		16	0.994512
750	12			75	0.975346
751	12			87	0.992554
755	83			16	0.994512
845		80		20	0.995493
858	20			80	0.995493
861	80			20	0.995493
863	16	83			0.994512
866	83		16		0.994512
867		83		16	0.994512
883		85	14		0.993533
884		85		14	0.993533
886	12		87		0.992554
887	87			12	0.992554
896	11	88			0.923564
897	11			88	0.923564
898			88	11	0.923564
1001	14		85		0.993533
1005		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain