SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6508

Length: 646 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6508 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18686	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	Chaperone protein htpG family protein [Arabidopsis thaliana] gb\|AAL32008.1\|AF436826_1 At2g04030/F3C11.14 [Arabidopsis thaliana] gb\|AAD32922.1\| putative heat shock protein [Arabidopsis thaliana] gb\|AAK96633.1\| At2g04030/F3C11.14 [Arabidopsis thaliana] gb\|A	-	-	76%
FL-Next	tr=GRP94; Pinus taeda (Loblolly pine).	-	-	62%
Blast2go	chaperone protein htpg family protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	85%
Blast2go	response to salt stress	GO:0009651	Biological Process	85%
Blast2go	response to chlorate	GO:0010157	Biological Process	85%
Blast2go	response to heat	GO:0009408	Biological Process	85%
Blast2go	de-etiolation	GO:0009704	Biological Process	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	mitochondrion	GO:0005739	Cellular Component	85%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	85%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	0.0	-
Sma3	Heat shock protein Hsp90	IPR001404	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
56	14	85			0.993533
57		85		14	0.993533
114		42		57	1.0
255		80		20	0.995493
256		80		20	0.995493
257	80	20			0.995493
258			80	20	0.995493
265	80		20		0.995493
266		80	20		0.995493
270		80		20	0.995493
275	20		80		0.995493
289		25		75	0.996473
297	33		66		0.997452
301			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain