SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6499

Length: 920 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6499

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25724	12/12

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PUB domain containing protein	-	-	3.0e-16	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	ubiquitin and wlm domain-containing protein	-	-	0.0	51%

Source	InterPros	Term	Type	e value	Identity
Sma3	PUG domain	IPR006567	-	0.0	-
Sma3	WLM	IPR013536	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX79

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 225 - 800

Fln protein: NV*LSRNEIMAEPDPDASLSEQPDTVYVLSRQSSDVQIVGSSSVGSNLNYGNSVTEMQHSTPGSRLNQPVTELQHDILGSRLNKPVVSGFESMQLNLEHEDADLRRIQESTAATSVRLQDAIQKLKSQVPPVEIAPVIRTLFTILKNVMDHPNETKFRRLRKANPIFQRSISKYQAALEVLRAVGFSEDNTFNEIGIAETCLVLKRNDPGLLWLARSSLEVCNA*

Protein Length: 226

Fln nts: AATGTATGACTGTCAAGAAATGAAATAATGGCTGAACCTGATCCTGATGCCAGCCTCTCAGAACAACCAGACACAGTATATGTCCTCTCTAGGCAATCAAGTGATGTTCAGATAGTTGGTTCCAGTTCTGTCGGATCAAATCTTAATTATGGAAATTCTGTTACAGAAATGCAACACAGCACTCCTGGTTCTAGACTGAACCAACCTGTTACAGAATTGCAACATGACATTCTTGGTTCTAGACTGAACAAACCTGTTGTAAGTGGCTTTGAATCCATGCAGTTGAACCTAGAACACGAAGATGCAGATTTGAGAAGAATTCAAGAGTCCACAGCTGCTACTTCTGTGCGCCTTCAAGATGCCATTCAAAAGCTCAAGTCTCAGGTGCCACCTGTTGAAATTGCCCCTGTTATTAGAACTTTGTTCACTATTCTAAAGAATGTCATGGATCATCCAAATGAAACCAAATTCAGACGCTTGCGCAAGGCTAATCCTATATTTCAACGATCCATTTCAAAGTATCAAGCTGCTTTAGAGGTTCTGCGTGCAGTAGGATTTTCTGAGGACAATACATTTAATGAAATTGGAATTGCAGAAACATGCTTAGTCTTGAAAAGGAACGACCCTGGCTTGTTATGGCTTGCCAGATCCTCTTTGGAGGTTTGCAATGCATAA___GACAAACTAGGATTTATTCACCATCTGCACATTGTTCATGCATAGATGAACATCCTCAGATTGACAAACATATTAATTCTGCACCTCTATTGGACATAAAATTGTGTACAAAATGTTCTGGAATGATGGTAGTAGGTGTTGAATTCTCCTCTGGTCACTTTACCTATATATGTTCTACTGACGATTGTGCAAAAATATCTCTAGTAGTGTGCCAAGGAAGTTCTGTTGGTAAATTTTCATACATT

Fln Alignment:

Contig6499___NEIMAEPDPDASLSEQPDTVYVLSRQSSDVQIVGSSSVGSNLNYGNSVTEMQHSTPGSRLNQPVTELQHDILGSRLNKPVVSGFESMQLNLEHEDADLRRIQESTAATSVRLQDAIQKLKSQVPPVEIAPVIRTLFTILKNVMDHPNETKFRRLRKANPIFQRSISKYQAALEVLRAVGFSEDNTFNEIGIAETCLVLKRNDPGLLWLARSSLEVCNA
A9NX79_________________NETMAEPDPDDILLGQPDTVDVLSRRSSDIHIFGSSYIGSNLNDGNSVTEMQHSSPDSSLNKPVTELQHGILGSRPNEPVVSDFESMQLNLEREDADLRRIQESTAATSARLQDAIQKLRSQVPPVEMASVIRTLFTILGNVMNHPNETKFRRLRKANPIFQRSIAKYEAALEVLRAVGFSEDNASNEIGITETCLVLKRNDPGLLWLARSSLEVCNA

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
266			87	12	0.992554
365	20	80			0.995493
423	25			75	0.996473
493	33	66			0.997452
494		33		66	0.997452
496	66			33	0.997452
556	25			75	0.996473
560			75	25	0.996473
756	80	20			0.995493
778		33		66	0.997452
780	66			33	0.997452
781	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain