SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6485

Length: 517 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene6485
AATGTCAAGCTCTTGTTCTTGTCAGGAGTTCATTGTTGCAGGGTCAAGCTCTGCAGGCTTTGCAACATTTTTTCGCATCTTTGGTGCAGTCAGCAAACACAAGCTTTGATGCTTTATTGGATGCTCTCCTTTCAAGCGCCAAACCTTCTCCACAATTGGGTGGTCTTGCAAAGCAAGCTCTGTATTCAATAGCTCAGTGTGTGGCAGTTCTTTGCCTTGCTGCAGGAGATCAGAAATGTGCATCCACTGTAGAAATGCTGATGAACATTCTGAGAGACAGTAGTGGCTCCAATTCGGCTCGACAACACCTCGCTCTGCTATGTCTTGGTGAAATTGGCAGACGGAAAGATCTAAGCCAGCATGCAAATATAGAAGGAATTGTGATTGAGTCTTTCCAATCTCCTTTTGAAGAAATAAAGTCAGCCGCTTCTTATGCACTTGGAAACATAGCCGTTGGAAACCTCTCTAAATATCTTCCATTTATTTTAAATCAAATTGACAACCAACAAAAGACATT

Ace file of the UniGene biog3_v1.0_unigene6485 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1650	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	cullin-associated NEDD8-dissociated protein 1 [Arabidopsis thaliana] sp\|Q8L5Y6.1\|CAND1_ARATH RecName: Full=Cullin-associated NEDD8-dissociated protein 1; AltName: Full=Cullin-associated and neddylation-dissociated protein 1; Short=AtCAND1; AltName: Full=P	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	87%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	87%
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	cell wall	GO:0005618	Cellular Component	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Glycine cleavage H-protein	IPR002930	-	-
Sma3		IPR005132	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	TATA-binding protein interacting (TIP20)	IPR013932	-	-
Sma3		IPR014734	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LME2

Fln msg: Distance to subject end: 332 aas, your sequence is shorter than subject: 87 - 420

Fln protein: MLMNILRDSSGSNSARQHLALLCLGEIGRRKDLSQHANIEGIVIESFQSPFEEIKSAASYALGNIAVGNLSKYLPFILNQIDNQQKT

Protein Length: 88

Fln nts: AATGTCAAGCTCTTGTTCTTGTCAGGAGTTCATTGTTGCAGGGTCAAGCTCTGCAGGCTTTGCAACATTTTTTCGCATCTTTGGTGCAGTCAGCAAACACAAGCTTTGATGCTTTATTGGATGCTCTCCTTTCAAGCGCCAAACCTTCTCCACAATTGGGTGGTCTTGCAAAGCAAGCTCTGTATTCAATAGCTCAGTGTGTGGCAGTTCTTTGCCTTGCTGCAGGAGATCAGAAATGTGCATCCACTGTAGAA_-_ATGCTGATGAACATTCTGAGAGACAGTAGTGGCTCCAATTCGGCTCGACAACACCTCGCTCTGCTATGTCTTGGTGAAATTGGCAGACGGAAAGATCTAAGCCAGCATGCAAATATAGAAGGAATTGTGATTGAGTCTTTCCAATCTCCTTTTGAAGAAATAAAGTCAGCCGCTTCTTATGCACTTGGAAACATAGCCGTTGGAAACCTCTCTAAATATCTTCCATTTATTTTAAATCAAATTGACAACCAACAAAAGACATT

Fln Alignment:

Contig6485___MLMNILRDSSGSNSARQHLALLCLGEIGRRKDLSQHANIEGIVIESFQSPFEEIKSAASYALGNIAVGNLSKYLPFILNQIDNQQK
B8LME2_________________MLMNILRDSSGANSARQHLALLCLGEIGRRKDLSQHANIEGIVIESFQSPFEEIKSAASYALGNIAVGNLSKYLPFILNQIDNQQK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
240	14			85	0.993533
241	14		85		0.993533
243		85	14		0.993533
255	14			85	0.993533
259		85		14	0.993533
320		75		25	0.996473
321	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain