SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6468

Length: 1417 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6468

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17576	44/45

Source	Descriptions	Term	Type	Identity
AutoFact	Lysyl-tRNA synthetase (Fragment) n=6 Tax=Magnoliophyta RepID=D7U9T8_VITVI	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	22%
Blast2go	lysyl-trna synthetase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Lysine--tRNA ligase.	EC:6.1.1.6	-	0.0	86%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminoacyl-tRNA biosynthesis	00970		0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	primary metabolic process	GO:0044238	Biological Process	86%
Blast2go	cellular macromolecule metabolic process	GO:0044260	Biological Process	86%
Blast2go	binding	GO:0005488	Molecular Function	86%
Blast2go	lysine-tRNA ligase activity	GO:0004824	Molecular Function	86%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class II (D/K/N)	IPR004364	-	-
Sma3	Aminoacyl-tRNA synthetase, class II (D/K/N)-like	IPR018150	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	Lysyl-tRNA synthetase, class II	IPR002313	-	-
Sma3	Lysyl-tRNA synthetase, class II, C-terminal	IPR018149	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Nucleic acid binding, OB-fold, tRNA/helicase-type	IPR004365	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX07

Fln msg: your sequence is shorter than subject: 418 - 566

Fln protein: KRGELSIFPVSFLVLSPCLHMMPRQRALPAKDHQAQTKENEGDKTTDIWSPGQPRNPERYVLKDQETRYRQRYLDLMVNSEVRHIFKTRAKIISYVRKFFDDLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELIVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYADYNDVMELTEKLLSGMVKKLTGGYKILYHANGVDKDPIEIDFTPPFRRIDMLQGLEEAAQLNIPKDISSEEANKYLLAACEKFDVKCPPPQTTTRLLDKLVGHFLEEQCVNPSFIINHPQIMSPLAKWHRTRPGLTERFELFVNKHEVCNAYTELNDPVVQRERFADQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGMGIDRLAMMLTDSQNIKEVLLFPAMKPQE*

Protein Length: 419

Fln nts: GCAAAAGGGGAGAACTTAGCATATTTCCTGTATCCTTTTTAGTTCTTTCGCCTTGTCTACACATGATGCCAAGGCAAAGAGCTCTCCCAGCAAAAGACCACCAGGCTCAGACAAAGGAAAATGAGGGAGATAAAACGACTGATATATGGTCTCCTGGTCAGCCTAGAAACCCTGAACGATATGTTCTGAAAGACCAGGAAACAAGATATCGGCAACGTTATCTAGATTTGATGGTCAACTCAGAGGTTAGGCATATCTTCAAAACAAGAGCAAAGATAATATCTTATGTGCGGAAGTTCTTTGATGACCTTGACTTTCTTGAGGTAGAAACGCCAATGATGAATATGATAGCTGGTGGAGCTGCTGCTAGGCCATTTGTTACTCATCACAATGACCTTAATATGAAGCTATATATGCGCATTGCCCCGGAGCTTTATCTGAAAGAATTGATCGTGGGTGGACTTGATCGTGTGTATGAAATTGGGAAACAATTTCGTAATGAGGGCATTGATTTAACTCATAACCCAGAGTTCACTACTTGTGAATTTTACATGGCCTATGCCGACTATAATGACGTGATGGAACTGACAGAAAAGTTGTTATCAGGGATGGTCAAGAAGTTAACTGGTGGCTATAAAATCCTTTACCATGCTAATGGGGTGGACAAGGATCCTATAGAAATTGATTTCACTCCTCCGTTCAGAAGGATAGACATGCTTCAAGGGTTGGAAGAGGCTGCACAACTCAACATCCCTAAAGATATCTCATCTGAGGAGGCAAACAAGTATCTTTTGGCTGCGTGTGAGAAGTTTGATGTGAAATGCCCTCCTCCTCAAACAACCACACGGTTGTTGGACAAGCTTGTCGGACATTTCTTGGAGGAGCAGTGTGTAAATCCATCATTCATCATAAATCATCCTCAGATCATGAGCCCTTTGGCAAAGTGGCACAGGACAAGGCCAGGGTTGACTGAACGTTTTGAACTCTTTGTTAATAAACACGAGGTGTGCAATGCCTATACCGAGCTTAATGATCCAGTTGTCCAGCGTGAGCGCTTTGCAGATCAGCTTAAGGACAGACAATCAGGTGATGATGAAGCAATGGCTCTTGACGAGACTTTTTGCACTGCGTTAGAGTATGGCTTACCACCAACTGGTGGTTGGGGAATGGGCATTGATCGACTTGCCATGATGTTAACAGACTCTCAGAATATAAAGGAGGTTTTACTTTTCCCTGCAATGAAACCTCAAGAATAG___CTTTTTCAAAGGTTGAACGTTTGATGACGGAGGTGGGATTTGGTCACATGCTGCTCGAGGAGACTCTGGAAATACTTGTAGGCCTATTTACAGTTGTCATGATGATTTTCTTTGCAGCTGAATAGCTTAAATTCTCGGCCACTAGTAAAGTGCCGTACATT

Fln Alignment:

Contig6468___QRALPAKDHQAQTKENEGDKTTDIWSPGQPRNPERYVLKDQETRYRQRYLDLMVNSEVRHIFKTRAKIISYVRKFFDDLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELIVGGLDRVYEIGKQFRNE-GIDLTHNPEFTTCEFYMAYAD-YNDVMELTEKLLSGMVKKLTGGYKILYHANGVDKDPIEIDFTPPFRRIDMLQGLEEAAQLNIP----KDISSEEANKYLLAACEKFDVKCPPPQTTTRLLDKLVGHFLEEQCVNPSFIINHPQIMSPLAKWHRTRPGLTERFELFVNKHEVCNAYTELNDPVVQRERFADQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGMGIDRLAMMLTDSQNIKEVLLFP
A9NX07_________________QPTLPINLEDAARSEKEFEKAE--------QTGEHVVRVGQDTRLNYRVLDLRTPAN-QGIFRVQSYVSMLFRQFLISEGFVELHTP--KLIAGASEGGSSVFKLDYKGQPACLAQSPQLHKQMAICADFGRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYFEVLDILDKLFITIFDGLNEHCKKELHAINQQYPFEPLKYLRKTLRLTFQEGVQMLKEAGIEVDPLGDFNTETERKLGGLVREKYD-------TDFYILHRY------PLAVRPFYTM--PCIDDPL---------YSNSFDVFIRGEEIISGAQRVHEPEFLTKR------AKELGID--VNTISTYIDSFRWGAVPHGGLGVGLERVVMLFCALNNIRKTSLFP

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
298	33			66	0.997452
299	33	66			0.997452
301			33	66	0.997452
345	83		16		0.994512
407	12		87		0.992554
409	12			87	0.992554
410	87			12	0.992554
468	12	87			0.992554
469	12		87		0.992554
496	12		87		0.992554
498	87			12	0.992554
526	12	87			0.992554
572	14			85	0.993533
573		14	85		0.993533
575		85		14	0.993533
576			85	14	0.993533
581	20		80		0.995493
582		20	80		0.995493
584	85			14	0.993533
585		71		28	1.0
619	80	20			0.995493
620	20		80		0.995493
659	20		80		0.995493
660	20		80		0.995493
663			80	20	0.995493
672	20	80			0.995493
674	20			80	0.995493
675	80			20	0.995493
789	14	85			0.993533
790	14			85	0.993533
792			14	85	0.993533
826	14	85			0.993533
829	16	83			0.994512
831		83		16	0.994512
836	83			16	0.994512
838	16	83			0.994512
841		83		16	0.994512
846	14	85			0.993533
847			85	14	0.993533
911	85			14	0.993533
981	16		83		0.994512
982	83	16			0.994512
984		83		16	0.994512
1078			87	12	0.992554
1079	87			12	0.992554
1118	33			66	1.0
1136	14		85		0.993533
1138	85		14		0.993533
1220		20	80		0.995493
1223	20		20	60	0.99255
1228	25			75	0.996473
1259	33			66	0.997452
1260		33		66	0.997452
1261	33			33	0.997753
1368	20			60	0.99255
1370	20			80	0.995493
1388	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain