SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6459

Length: 962 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6459 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8054	19/20
SustainPine v2.0	sp_v2.0_unigene21432	1/20

Source	Descriptions	Term	Type	Identity
AutoFact	putative serine/threonine protein kinase [Arabidopsis thaliana] gb\|AAK25900.1\|AF360190_1 putative kinase [Arabidopsis thaliana] gb\|AAK64081.1\| putative kinase [Arabidopsis thaliana] gb\|AEE84141.1\| putative serine/threonine protein kinase [Arabidopsis thal	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	cyclin-dependent kinase f-4-like	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	[RNA-polymerase]-subunit kinase.	EC:2.7.11.23	-	0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	77%
Blast2go	RNA polymerase II carboxy-terminal domain kinase activity	GO:0008353	Molecular Function	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	77%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR77

Fln msg: Distance to subject end: 179 aas, your sequence is shorter than subject: 289 - 468

Fln protein: MDRYKVIKELGDGTYGIVWKAINRSTNEIVAIKKMKRKYYSWEECMSLREVKSLRKMNHPNIVKLKEVIRENDHLYFVFEYMECNLYQLMKDNDKLFQESKVRNWCFQLFQALAYMHQHGYFHRDLKPENLLVTKDVIKIADFGLAREVCSQPPFTEYVSTRWYRAPEVLLQSSSYGSAVDMWAMGAIMAELFTLRPLFPGSSEADEIYKICSVIGSPNHQTWSEGLRLATSMQYQFPQFISTHLSTLIPSASAEAIDLMASLCAWDPTKRPTAAESLKHPFFQACVYI

Protein Length: 290

Fln nts: CATTTTTGTCTCCATGTTATGGACAGCTTTCAGATTGAATAAGAAAGATCCGAGTTACTGAACTCTGATATTTCCAGCGACTCTCCATTAGAGCA_-_ATGGATCGGTACAAGGTTATCAAAGAACTGGGAGATGGCACTTATGGGATTGTGTGGAAGGCGATTAATCGCTCAACCAATGAAATTGTTGCCATCAAGAAAATGAAGAGGAAGTATTATTCATGGGAGGAATGTATGAGTCTTAGGGAAGTAAAGTCTCTTCGCAAAATGAATCATCCTAATATAGTTAAGCTGAAGGAGGTTATCAGAGAGAACGACCACTTGTATTTTGTTTTTGAGTACATGGAGTGCAACTTGTACCAGTTAATGAAAGACAATGACAAGCTTTTTCAAGAATCTAAAGTACGGAACTGGTGCTTCCAATTGTTTCAAGCTCTTGCTTATATGCACCAACATGGATATTTTCATCGTGATCTTAAACCTGAAAATTTGCTAGTTACCAAAGACGTTATCAAAATTGCAGATTTTGGTCTTGCACGAGAAGTCTGCTCACAGCCACCATTTACAGAATATGTCTCAACACGATGGTACCGTGCTCCTGAAGTTCTGCTGCAGTCTTCTTCCTATGGCTCTGCCGTAGATATGTGGGCTATGGGTGCTATCATGGCGGAGCTTTTTACCCTTCGTCCGCTCTTTCCAGGTTCTAGCGAAGCAGATGAAATATACAAAATATGTAGTGTAATTGGGAGTCCTAATCACCAGACATGGTCTGAAGGCTTAAGGCTTGCCACTTCTATGCAGTATCAATTTCCTCAGTTTATTTCCACTCATCTTTCGACCTTGATACCGTCTGCAAGTGCTGAAGCTATTGATCTCATGGCTTCACTGTGTGCATGGGATCCAACCAAGAGGCCAACTGCAGCTGAATCACTAAAGCATCCATTTTTCCAGGCCTGCGTCTACATT

Fln Alignment:

Contig6459___MDRYKVIKELGDGTYGIVWKAINRSTNEIVAIKKMKRKYYSWEECMSLREVKSLRKMNHPNIVKLKEVIRENDHLYFVFEYMECNLYQLMKDNDKLFQESKVRNWCFQLFQALAYMHQHGYFHRDLKPENLLVTKDVIKIADFGLAREVCSQPPFTEYVSTRWYRAPEVLLQSSSYGSAVDMWAMGAIMAELFTLRPLFPGSSEADEIYKICSVIGSPNHQTWSEGLRLATSMQYQFPQFISTHLSTLIPSASAEAIDLMASLCAWDPTKRPTAAESLKHPFFQACVYI
B8LR77_________________MDRYKVIKELGDGTYGIVWKAINRSTNEIVAIKKMKRKYYSWEECMSLREVKSLRKMNHPNIVKLKEVIRENDHLYFVFEYMECNLYQLMKDNDKLFSESKVRNWCFQLFQALAYMHQHGYFHRDLKPENLLVTKDVIKIADFGLAREVCSQPPFTEYVSTRWYRAPEVLLQSSSYGSAVDMWAMGAIMAELFTLRPLFPGSSEADEIYKICSVIGSPNHQTWSEGLRLATSMQYQFPQFISTHLSTLIPSASAEAIDLMASLCAWDPTKRPTAAESLKHPFFQACVYV

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
72	25	75			0.996473
77	75			25	0.996473
89	20	80			0.995493
93	80			20	0.995493
115		80		20	0.995493
249	20			80	0.995493
518	16		83		0.994512
519	16		83		0.994512
564	14			85	0.993533
566		85		14	0.993533
602	16			83	0.994512
603		16		83	0.994512
605	83			16	0.994512
606		83		16	0.994512
686		25		75	0.996473
712	80			20	0.995493
723		80		20	0.995493
826	83	16			0.994512
899	25	75			0.996473
901		25	75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain