SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6395

Length: 1603 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6395 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7744	47/47

Source	Descriptions	Term	Type	Identity
AutoFact	oligopeptide transporter OPT family protein [Musa acuminata]	-	-	73%
FL-Next	sp=Oligopeptide transporter 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	73%
Blast2go	oligopeptide transporter opt family	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	oligopeptide transport	GO:0006857	Biological Process	85%
Blast2go	transmembrane transport	GO:0055085	Biological Process	85%
Blast2go	cellular metal ion homeostasis	GO:0006875	Biological Process	85%
Blast2go	oligopeptide transporter activity	GO:0015198	Molecular Function	85%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	85%
Blast2go	membrane	GO:0016020	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p	IPR001678	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Tetrapeptide transporter, OPT1/isp4	IPR004648	-	-
Sma3	Oligopeptide transporter OPT superfamily	IPR004813	-	-
Sma3	Nop2p	IPR011023	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Deoxyribonuclease, TatD-related, conserved site	IPR018228	-	-
Sma3	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site	IPR018314	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O23482

Fln msg: Overlapping hits, possible frame ERROR between 126 and 68, your sequence is shorter than subject: 405 - 737

Fln protein: NVTQILTPQFNLNIRAYNDYGKxxxxxxxxxxxxxxxxxxxxxTFTHVLLFNGHDILKRSRSALNADKLDVHARLMKNYKGVPEWWFLILLVGSVAFCILLSFVWKDEVQIPWWGLVLACALAWVITLPIGVIQATTNQQPGYDIIAQYMFGYVLPGKPIANLLFKIYGRISSIHALSFLADLKLGHYMKIPPRCMYAAQLVGTLLAGVVNLVVAWWMLESIDNICNVEALPPDSPWTCPKYRVTFDQSVIWGLVGPRRMFGNHQLYENLVWLFLVGALLPVPFWILSKLFPKQKWISQINMPVLTYGFAGMPPATPANIASWIITGTIFNYFVFRYRKRWWQRYNYVLSAALDAGTAFMGVLLYFALGMQQKNLTWWGTELDHCPLASCPTAPGIVVKGCPVF*

Protein Length: 406

Fln nts: AATGTAACACAGATCTTGACACCGCAGTTTAATTTGAATATAAGGGCTTATAATGACTATGGAAAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACTTTTACACATGTGCTCCTATTCAATGGACATGACATTCTGAAGAGGAGCAGATCTGCTCTAAATGCTGATAAATTAGATGTGCATGCACGCTTGATGAAGAATTATAAGGGAGTCCCGGAATGGTGGTTTCTCATCTTGTTAGTTGGCAGCGTGGCATTCTGTATTTTATTATCATTTGTATGGAAGGATGAGGTTCAAATTCCATGGTGGGGTTTGGTATTAGCATGTGCATTGGCCTGGGTGATAACTCTTCCAATCGGAGTCATTCAAGCAACTACAAACCAGCAACCAGGTTATGATATTATAGCACAGTACATGTTTGGGTACGTCTTGCCGGGGAAACCTATAGCGAATCTATTGTTCAAGATTTACGGCAGGATAAGTAGCATACATGCACTTTCTTTCCTTGCGGACCTCAAGCTTGGTCACTATATGAAAATTCCTCCACGTTGTATGTACGCTGCTCAGCTTGTGGGCACACTTCTAGCAGGCGTGGTGAATCTGGTTGTTGCTTGGTGGATGCTGGAATCTATAGATAACATCTGTAATGTGGAAGCTTTACCTCCTGACAGCCCATGGACATGTCCAAAGTACAGAGTAACATTTGATCAATCTGTCATTTGGGGTCTTGTCGGTCCAAGGCGCATGTTTGGAAACCATCAGCTGTATGAAAATCTGGTCTGGCTTTTCCTTGTGGGTGCACTTCTCCCTGTGCCATTTTGGATTTTGAGTAAGCTGTTCCCCAAGCAAAAATGGATTTCACAGATAAACATGCCTGTCCTTACATATGGGTTCGCTGGCATGCCTCCTGCCACTCCTGCCAACATTGCTTCTTGGATCATAACAGGTACTATCTTCAATTATTTTGTATTCCGCTACAGGAAGAGGTGGTGGCAGCGATACAATTATGTGCTTTCTGCAGCCCTAGATGCTGGTACAGCATTTATGGGAGTGCTGTTGTACTTCGCACTTGGTATGCAGCAGAAGAATTTAACCTGGTGGGGGACAGAGCTGGACCATTGCCCACTTGCTTCCTGTCCAACTGCCCCCGGCATTGTTGTCAAGGGATGTCCAGTGTTCTGATTATCAGCTTTTCTCATATGCAATAGGATTTAGTTCTCTTTTCCTGAGGAGAACATATTGCTACGCCGTTACTTTTACAGCTCAAAAGAAGAAGTTCTCTTGTACTTGTCGAATTTCTTGGCAGTATAAGTTTGTCAGAATAATTCTGCTATCTTCAGCAGCTAAGCGAGGTGGCTTTTATAAATAGCATGGAAGAAATACAAACTTAACGATTCCAAGTACAGAAGGAATTCAATCATGATTACTGGAAGGCCTCTTATAAATAGCATGGAAGAAATACAAACTTCACGATTCCAAGTACAGAAGGAATTCAATCATGACTACTGGAAGGCCTCTGGATCCCCTGAAGGAATTTCTATGTACGGTCTTATACAGTTTTTGGAATACATT

Fln Alignment:

Contig6395___NVTQILTPQFNLNIRAYNDYGKLxxxxxxxxxxxxxxxxxxxATFTHVLLFNGHDILKRSRSALNADKLDVHARLMKNYKGVPEWWFLILLVGSVAFCILLSFVWKDEVQIPWWGLVLACALAWVITLPIGVIQATTNQQPGYDIIAQYMFGYVLPGKPIANLLFKIYGRISSIHALSFLADLKLGHYMKIPPRCMYAAQLVGTLLAGVVNLVVAWWMLESIDNICNVEALPPDSPWTCPKYRVTFDQSVIWGLVGPRRMFGNHQLYENLVWLFLVGALLPVPFWILSKLFPKQKWISQINMPVLTYGFAGMPPATPANIASWIITGTIFNYFVFRYRKRWWQRYNYVLSAALDAGTAFMGVLLYFALGMQQKNLTWWGTELDHCPLASCPTAPGIVVKGCPVF
O23482_________________DTTKILTPQFDLDIGAYNNYGKLxxxxxxxxxxxxxxxxxxxATLTHVALFNGRDIWKQTWSAVNTTKLDIHGKLMQSYKKVPEWWFYILLAGSVAMSLLMSFVWKESVQLPWWGMLFAFALAFIVTLPIGVIQATTNQQPGYDIIGQFIIGYILPGKPIANLIFKIYGRISTVHALSFLADLKLGHYMKIPPRCMYTAQLVGTVVAGVVNLGVAWWMLESIQDICDIEGDHPNSPWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLFLIGAVLPVPVWALSKIFPNKKWIPLINIPVISYGFAGMPPATPTNIASWLVTGTIFNYFVFNYHKRWWQKYNYVLSAALDAGTAFMGVLLFFALQNAGHDLKWWGTEVDHCPLASCPTAPGIKAKGCPVF

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1185	14		85		0.993533
1186	14			85	0.993533
1189		85		14	0.993533
1291	14	85			0.993533
1295	85			14	0.993533
1320	12	87			0.992554
1323		87		12	0.992554
1324			87	12	0.992554
1467	20		80		0.995493
1468		20		80	0.995493
1469	20		80		0.995493
1471	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain