SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6366

Length: 1087 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6366 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27591	19/20

Source	Descriptions	Term	Type	Identity
AutoFact	Putative chorismate mutase n=1 Tax=Fagus sylvatica RepID=Q30CZ6_FAGSY	-	-	63%
FL-Next	sp=Chorismate mutase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	66%
Blast2go	chorismate mutase 1	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Chorismate mutase.	EC:5.4.99.5	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	78%
Blast2go	Biosynthesis of phenylpropanoids	01061	78%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	78%
Blast2go	Metabolic pathways	01100	78%
Blast2go	Biosynthesis of secondary metabolites	01110	78%

Source	GOs	Term	Type	Identity
Blast2go	response to biotic stimulus	GO:0009607	Biological Process	78%
Blast2go	tryptophan biosynthetic process	GO:0000162	Biological Process	78%
Blast2go	chorismate mutase activity	GO:0004106	Molecular Function	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Chorismate mutase	IPR002701	-	0.0	-
Sma3	Chorismate mutase, AroQ class, eukaryotic type	IPR008238	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P42738

Fln msg: your sequence is shorter than subject: 304 - 340

Fln protein: NVFGSHTQRFTMSFSQEKRKSCSWAPISTSYSDLQITRVSTSPTFGVENKRLDMSKNLTLDSIRYSLIRQEDSIIFNLLERAQYCYNGPTYDANAFTMPGFSGSLIEFILRETEILHAKVGRYKSPDEHPFFPDALPDPLLPPLQYPPVLHPAAQSININKLIWSMYYDNLLPRFAATGDDGNYGSTAVCDTMCLQALSKRIHYGKFVAEAKFRGSPELYEVAIRAQDKEQLMNLLTFESVETAVQRRVEQKAKAYGLEVSLDTTKADSTYKIQPSLIANLYGDWIMPLTKMVQVEYLLRRLD*

Protein Length: 305

Fln nts: AATGTATTTGGATCCCATACACAGCGTTTTACAATGAGCTTTTCTCAAGAAAAACGAAAATCCTGTAGTTGGGCACCCATTTCAACGTCATACTCTGATCTTCAGATAACCCGGGTTTCGACTTCGCCGACATTCGGAGTGGAAAACAAGCGGTTAGATATGAGCAAAAACCTGACCTTGGACAGTATCCGTTATTCTCTGATCCGTCAAGAGGACAGCATCATTTTCAACCTTCTGGAGAGAGCCCAATACTGTTACAATGGCCCCACTTACGATGCCAATGCTTTCACCATGCCTGGATTCAGTGGCTCGCTTATAGAATTCATACTCAGAGAAACCGAAATACTCCATGCCAAAGTGGGCAGATACAAAAGCCCAGATGAACATCCATTCTTTCCTGATGCTTTACCAGACCCCTTACTCCCTCCATTACAATACCCACCGGTGTTGCACCCGGCAGCTCAGTCTATCAATATAAATAAACTGATTTGGAGTATGTATTATGATAACTTGCTTCCACGATTTGCTGCCACGGGAGATGATGGCAACTATGGGTCAACTGCAGTCTGTGATACCATGTGTTTGCAGGCCCTTTCCAAAAGGATACATTACGGAAAATTTGTAGCTGAAGCCAAGTTTAGAGGCTCGCCAGAACTATATGAAGTTGCAATTCGTGCCCAGGACAAGGAGCAGCTAATGAACTTACTCACATTTGAAAGTGTTGAGACAGCAGTTCAGAGAAGAGTAGAGCAAAAAGCAAAAGCATATGGTCTAGAGGTCAGCTTGGACACCACAAAAGCAGATTCAACCTACAAAATTCAACCTTCTTTAATTGCCAATCTCTATGGAGACTGGATAATGCCTTTGACTAAAATGGTTCAGGTTGAATATCTACTAAGAAGACTTGACTAA___AAATTTCACTTCCATATTTCTCTGTTAAAGTATAGCCGTTAAATTGTTGTGTCTACCCAAGATAAAGATGCCATATGAAGCTTTCACACAGAAGAAATGTATTTCATTTCACTGTACAGAAGAAGTGCCATTTACATGCTTTGAGGCCATCCTTGTAATCAATGCTTCTGACATT

Fln Alignment:

Contig6366___KRLDMSKNLTLDSIRYSLIRQEDSIIFNLLERAQYCYNGPTYDANAFTMPGFSGSLIEFILRETEILHAKVGRYKSPDEXXXXXXXXXXXXXXXXXXXXXXXXAAQSININKLIWSMYYDNLLPRFAATGDDGNYGSTAVCDTMCLQALSKRIHYGKFVAEAKFRGSPELYEVAIRAQDKEQLMNLLTFESVETAVQRRVEQKAKAYGLEVSLDTTKADS---------TYKIQPSLIANLYGDWIMPLTKMVQVEYLLRRLD
P42738_________________KRVDESESLTLEGIRNSLIRQEDSIIFGLLERAKYCYNADTYDPTAFDMDGFNGSLVEYMVKGTEKLHAKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAADSININKKIWNMYFRDLVPRLVKKGDDGNYGSTAVCDAICLQCLSKRIHYGKFVAEAKFQASPEAYESAIKAQDKDALMDMLTFPTVEDAIKKRVEMKTRTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYGDWIMPLTKEVQVEYLLRRLD

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
563	14		85		0.993533
564		85		14	0.993533
565	85		14		0.993533
566	85			14	0.993533
725	25		25	50	0.995533
727	25	50	25		0.995533
731	25	50		25	0.995533
732	25	75			0.996473
741	20	80			0.995493
745			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain