SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6343

Length: 1262 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6343

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22478	9/12
SustainPine v2.0	sp_v2.0_unigene25743	3/12

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam05955, Herpes_gp2, Equine herpesvirus glycoprotein gp2	-	-	6.0e-09	23%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	64%
Blast2go	hydroxyproline-rich glycoprotein family protein	-	-	0.0	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	77%
Blast2go	nuclear envelope	GO:0005635	Cellular Component	0.0	77%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: B9S8N7

Fln msg: Overlapping hits, possible frame ERROR between 49 and 40, Unexpected stop codon in the beginning of your sequence, query STOP codon is far from subject stop. Distance to subject end: 16 aas, your sequence is shorter than subject: 125 - 412

Fln protein: M*SLPSVISNVHxxxxxVAAQVETFHQRIGSMRAAYLADQRRRGDENDPFLEADRRELAKREAAAKRVHPALHASTFSQNSTQVAGLFTSSAAPANVFVRHVPFYTVNSWDFYCCFIWGRVFHV*

Protein Length: 126

Fln nts: AATGTAGTCTTTACCCTCAGTAATATCTAATGTCCATxxxxxxxxxxxxxxxGTCGCTGCTCAGGTTGAGACATTTCATCAAAGGATAGGATCGATGCGTGCTGCATATCTTGCTGATCAACGCCGCAGGGGGGATGAGAACGACCCTTTTCTTGAAGCTGACAGGCGGGAATTAGCAAAGAGAGAAGCTGCAGCGAAAAGAGTTCATCCGGCATTGCATGCATCTACATTTTCACAAAATTCTACTCAGGTTGCTGGCTTATTTACCAGTTCAGCAGCACCTGCCAATGTCTTTGTCAGGCATGTCCCATTCTACACAGTCAACTCCTGGGACTTTTACTGCTGCTTCATCTGGGGCAGGGTTTTCCATGTTTAGTGCTCCAGCATCATCTTCAAGTTCTTCATCTTTTCTCTTTTCCACACAAGCAACCTCTGCACCTAGTTCCATTTTTGGGTCTTCTGGGGCCTTGCAAACACCCTCTATGTTTGGGACTTCGCAGACAACGCCATCAATGTTTGGGGCAAATACATCTTCTTCTCTTTTTCCTTCAGCCACAGCAGCTGCGAGTTCCTCATCATTGTTTTCATCTTCAGCTTTTGGCACAGGTGCTGGAACTACTTCAGGTTCAAGTTTTGGAACTGCTACTAAAACTTCGAAGCCCAAACCTCGTACAACACGACGCTAAATGCTGGATAGTTTAGATTTGAGTAAATTCTTTCAAGGATGAGGTAGAGGACAAAAGTTGAACTAAATTAAATGGCACATATATGAACAAAGAAGCTTGATTGATATTCAATTCCATTATAGGCAGTATGTAAGAGGAATTAGACATTCCATGACTTTCCATGGATGGTGAAGTTTCTGTAGCAGCGAATAGAGCCTGGCATTGAAATGGAGAGATTATGCATCTATATTGAAGATGTCTTGGAGAACTTTTTGATAATTTTTTTGGGTCAAGCTTCAGTTTTACACAGGAATAGCTTCTTGCAAGAAGCCATCTATCTTTGTGTCTGTTTCTGGACAGTTGATGCACGCTTCTCAGCTATAGCCAAGGTAGAAGCTAGCTTATTCCAGACATTTCAACTAATTGCCAGTGATCTTAGGCCTGGAAGTTAAGAAAGCTCTGCAACCTCTGATCAGTGCTTGCTGCATGTGGACATCTGCATTTATCGAGAAAGGACAGTCAAAGATAATTCTGTAGGCAAAGGATTGCCAAATCATGTAAGAGATGAATGAACTTCTGCAAATTCCATAAGTTATTA

Fln Alignment:

Contig6343___SLPSVISNVHDFxxHVVAAQVETFHQRIGSMRAAYLADQRRRGDENDPFXXXXXXXXXXXXXXXXXVHPALHASTFSQNSTQVAGLFTSSAAP-ANVFVRHV
B9S8N7_________________SLPKVMENLHDFxxHVTS-KVESIHQYIESMRTAYLADQRRRGELNDPFLEADRRETAKQEAAAKRVHPTLHLPPNSQPSTQVAGLFASSATPGASVPHRHL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
287	50			50	1.0
288	50	50			1.0
388		83		16	0.994512
740	50		50		1.0
778			83	16	0.994512
779	83			16	0.994512
849	20		80		0.995493
850		20	80		0.995493
853			80	20	0.995493
894	25			75	0.996473
895		25	75		0.996473
896	25		75		0.996473
897	75			25	0.996473
898			75	25	0.996473
904	33		66		0.997452
906			33	33	0.997753
911		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain