SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6316

Length: 395 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene6316
AATGTCTTTTTGGCAGCAGGGGGCCTCTTCCCATAGGCAAAAACCAGAGCCATAGCCAGTCTCAGGCTCAACAGGAGGGGACTAGTGGGAGTGATAATTCATCTGCTATACCCACAGTTTCTGCTGTTGCAAGAGCATTGCTCCCCAGCAAACGCAGGCTCAGGCTTGATCCTGATAACAAGCTTTACTTCCCCTATGAACCTGGTAAACAAGTTTCAAGTGCAGTAAGGATTCTTAATATAAGTCGCTGCAATGTGGCGTTCAAGTTTCAAACTACTGCTCCTAAAAGCTGCTTTATGCGCCCTCCTAGTGGTATGCTTGCTCCAGGAGAGTCACTTATAGCAACTGTCTTTAAGTTTGTGGAACCACCAGAGCAGCCTGAGAAACAACATGAC

Ace file of the UniGene biog3_v1.0_unigene6316 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7134	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Vesicle-associated protein 4-2 n=3 Tax=Arabidopsis RepID=VAP42_ARATH	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	vesicle-associated protein 4-2-like	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	response to gibberellin stimulus	GO:0009739	Biological Process	81%
Blast2go	structural molecule activity	GO:0005198	Molecular Function	81%
Blast2go	plastid	GO:0009536	Cellular Component	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Major sperm protein	IPR000535	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	PapD-like	IPR008962	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUN7

Fln msg: Distance to subject end: 111 aas, atg_distance in limit (1-15): atg_distance = 12, W2: There is no M at the beginning, your sequence is shorter than subject: 131 - 253

Fln protein: CLFGSRGPLPIGKNQSHSQSQAQQEGTSGSDNSSAIPTVSAVARALLPSKRRLRLDPDNKLYFPYEPGKQVSSAVRILNISRCNVAFKFQTTAPKSCFMRPPSGMLAPGESLIATVFKFVEPPEQPEKQHD

Protein Length: 132

Fln nts: A_-_ATGTCTTTTTGGCAGCAGGGGGCCTCTTCCCATAGGCAAAAACCAGAGCCATAGCCAGTCTCAGGCTCAACAGGAGGGGACTAGTGGGAGTGATAATTCATCTGCTATACCCACAGTTTCTGCTGTTGCAAGAGCATTGCTCCCCAGCAAACGCAGGCTCAGGCTTGATCCTGATAACAAGCTTTACTTCCCCTATGAACCTGGTAAACAAGTTTCAAGTGCAGTAAGGATTCTTAATATAAGTCGCTGCAATGTGGCGTTCAAGTTTCAAACTACTGCTCCTAAAAGCTGCTTTATGCGCCCTCCTAGTGGTATGCTTGCTCCAGGAGAGTCACTTATAGCAACTGTCTTTAAGTTTGTGGAACCACCAGAGCAGCCTGAGAAACAACATGAC

Fln Alignment:

Contig6316___SHSQSQAQQEGTSGSDNSSAIPTVSAVARALLPSKRRLRLDPDNKLYFPYEPGKQVSSAVRILNISRCNVAFKFQTTAPKSCFMRPPSGMLAPGESLIATVFKFVEPPEQPEKQ
A9NUN7_________________SRGSEEQQPIVSAGTTKNSKQISLATIAKTTLMSRRRLRLNPEGKLFFLYEPGKQVSSAVRIKNVSRSYVAFKFQTNAPKSCYMRPPGGILAPKESILASVAKFIEPPEHPAEK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
213		16	83		0.994512
214	16	83			0.994512
216	16			83	0.994512
217		20	80		0.995493
284	25			75	0.996473
285		25	75		0.996473
286	25		75		0.996473
287			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain