SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6306

Length: 1265 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6306 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12917	25/32
SustainPine v2.0	sp_v2.0_unigene61198	7/32

Source	Descriptions	Term	Type	Identity
AutoFact	LIM domain protein WLIM-1 [Helianthus annuus]	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	pollen-specific protein	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	85%
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, LIM-type	IPR001781	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNM5

Fln msg:

Fln protein: MAFAGTQQKCKACEKTVYVVDQLTADGSVFHKACFRCHHCNGTLKLSNYSSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKAVKNEKLNDGEIKTPNRVSALFSGTQEKCLACGNTVYPIEKVSVEGVGYHKACFKCMHGGCVISPSNYIAIEGRLYCKHHHAQLFKEKGNYSQLIKTPSVKEVSENSVHE*

Protein Length: 193

Fln nts: AATGTAAGACATTTATGAAATCCAAATCTAAAACCAGCAAAAACCAAACTCAAGTGTCGATCTCATCGATCAGAGTAGACCACAAGTATTTCTGGTGTGAATCACATCGGAG_-_ATGGCATTCGCAGGAACACAGCAGAAGTGCAAGGCATGCGAGAAGACGGTGTACGTGGTGGATCAGCTCACAGCCGATGGTTCAGTCTTTCACAAGGCCTGCTTCCGCTGCCATCATTGCAATGGCACCTTAAAGCTCAGCAACTATTCTTCTTTTGAAGGGGTGCTATACTGCAAACCTCACTTCGATCAGCTCTTTAAGAGGACTGGAAGTCTTGACAAAAGTTTTGAAGGAACTCCCAAAGCTGTGAAAAATGAGAAGTTGAATGATGGTGAGATTAAGACACCCAACAGGGTCTCTGCTTTGTTTTCTGGCACACAAGAGAAATGCCTTGCTTGTGGAAATACAGTTTATCCCATTGAAAAGGTTTCTGTGGAAGGTGTGGGATACCACAAGGCATGCTTCAAGTGTATGCATGGTGGTTGTGTTATCAGTCCCTCGAACTATATTGCAATTGAGGGCAGGCTTTATTGCAAACATCACCATGCTCAGCTCTTCAAAGAAAAGGGCAATTATAGCCAACTTATCAAAACTCCATCTGTCAAAGAAGTATCAGAGAATTCAGTACACGAGTGA___TTATGCAGCTGAAGTTTGACAAAATTATCTTTGGTGCAATTATCCCCATTTGTTTGTTAGCAAGGTGCAATGTACAGTTTAACATGACTATTGGGGACATTGGTCTTTTATTTCAGTGATATGGTGTTTCAGCAAAACTATTTTCAAATTACCTTTTACAAATGGTTGTTTTGATCTGTGAGTTGGAGTGTTTCAATATTTATAATGCCTATGGGATTGGTACAGCTGAGTATTAGACTATTAGTTGAGGCGCATATACTAAGTTGAGTCCATGCACGGAAGACGCTGCTGCTGTTAAGTGGCTATTAGTGGCAGTTACCGTAACTCACTTAATGCTCCTGTCTATAGCAATCCGTGTTATGTTTTAAAATTGATGTACATTCTGGTTGAGGAAGAAAGAAGCAGGGGTTGTGCTGATCACTTGAGAATATGTTATATCGTTCAATGTTTCTCGAAAACATTTTCTGAGGTTTGAGATTTGTATTATTTCAAGGCCTTTGAATTTGCCTATAAACTGCTGTTATTGGTATTTTTTAACTGTTATATGTATAATTGCCCTTGGATTTGGTACTATTAC

Fln Alignment:

Contig6306___MAFAGTQQKCKACEKTVYVVDQLTADGSVFHKACFRCHHCNGTLKLSNYSSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKAVKNEKLNDGEIKTPNRVSALFSGTQEKCLACGNTVYPIEKVSVEGVGYHKACFKCMHGGCVISPSNYIAIEGRLYCKHHHAQLFKEKGNYSQLIKTPSVKEVSEN
A9NNM5_________________MAFAGTQQKCKACEKTVYVVDQLTADGSVFHKACFRCHHCNGTLKLSNYSSFEGVLYCKPHFDQLFKRTGSLDKSFEGTPKAVKNEKLNDGEIKTPSRVSALFSGTQEKCLACGNTVYPIEKVSVEGVGYHKQCFKCIHGGCVISPSNYIAIEGRLYCKHHHAQLFKEKGNYSQLIKTPSVKEISEN

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
198	75			25	0.996473
200			75	25	0.996473
255	16		83		0.994512
257			16	83	0.994512
258	83			16	0.994512
262		16		83	0.994512
342	16		83		0.994512
344		83	16		0.994512
381	83			16	0.994512
412		83		16	0.994512
413	83		16		0.994512
414	83			16	0.994512
418		16		83	0.994512
652	11			88	0.923564
653		11		88	0.923564
654	11	88			0.923564
710		10		90	0.90298
712			90	10	0.90298
741	10		90		0.90298
745	90			10	0.90298
824	75			25	0.996473
825			75	25	0.996473
1044	33		66		0.997452
1048			66	33	0.997452
1059	25	75			0.996473
1061			75	25	0.996473
1111		75		25	0.996473
1112		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain