SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6305

Length: 1969 nt

UniGene Fasta

>biog3_v1.0_unigene6305
GAGACGAGATCAGATCTGCAGAGAAATGGAATAGGCGCGATCCTTGATATGTGTGGAAAGCAAGTTACATATACATACAATGTGGCTGGTTTGAACATTCTTCTTCTATGGCTGTGCCTGAATCCTGGTGTGAACGTAGTAGAGGGATCTGTACACAAATATGTTGGAGCAAAGTTCAGTGGCAATGGAAATGCTTTTCTGCTGTATGGAGGAAGCGAGGGTCTCAGGGCTTCCTCCTCTTCTTCATCTTCCTTGGGTAAGGACGTGGTATCTGGCGTTAACGATGGAAGATCTTTTATCAGGTTAGATAATATAACATTTCATAGGAGAAAAGAAATTGCTGCTCAAGATTCAAATATGGACCATGACACTGGGCTTGTTCAGGTTCTTATCTTTGAGGCAGCTGATCGGGATAACATAGGTGGTTCACCCTATGGTGGTCAGAAGGCTATTTGCTGTACTCCAGATCTTTCAAAGCTAGAAAATTGCAAACAGGGTGAAGTCATTTGGCGGCCTTCAGCGAAAGATGCCACCTGGCCTTATGTGACAAGCGTCCGCTTCCATGGAGATGCTACAGAAGTCACCTTGGAAACTATAAATGTGCCAATTACCATGACAGGAATGTATAACTTGTATTTTATATTTTGTGAACCTAAACTTAAAGGGCTGGTAATGACTGGAAAGACGATATGGAAAAATCCCACAGGTTATCTACCTGGGAGGATGGCACCACTAATGACCTTTTATGGTCTAATGTCCCTTGCATACCTTCTCCTTGGGATTGTTTGGTTTTCCCAGTATGCCAGATTTTGGAGAGAAATTTTACAGCTTCAGAACTGTATTACTCTTGTTATTTCTTTGGGTATGTTTGAAATGACACTGTTGTACTTTGAATACGCAAATTTCAATGCAACTGGAATCAGGTCCACAGGTATTACTATTTGGGCTGTTACATTTGGTGCTGTCAAGAGAACCATATCCCGACTCATTATCTTGGTTGTTTCAATGGGCTATGGTGTAGTAAGGCCCACTCTAGGAGGTCTTACTTCGAAGGTGCTTCTTCTGGGAGCAACATTCTTCCTGGCATCTGAGTTGCTTGATCTTGTGGAGAATGTGGGGTCCATCAATGATCTATCAGGAAAAGCCAGATTGTTTCTTGTTCTGCCAGTTGCAATTGTGGACGCTTTCATCGTTATTTGGATTTTTACTTCTTTGTCTAAAACATTGGAGAAACTTCAGGCAAGGAGGTCGCTTGCTAAGCTAGACATTTACAGGAAGTTCACTAATGCATTGGCAGTTGCTGTATTTGTTTCCGTGGCATGGATTGGATATGAGCTGTATTTCAAGGCAACTGATCCGTTCAGTGAGCGTTGGCAGAGTGCATGGGTTATAAGTGCATTTTGGCATGTTCTTTCATTTTCTTTGCTTTGTGTCATCTGTGCACTTTGGGCTCCATCTCAAAACTCCACTAGATATGCTTACTCAGATGATGTAGGAGAAGAGTTTGGTGAAGAAGAGACGATGTCTTTGACCAAGTCGTTAGCAAAGGTTGACGGTGATGAAAACTCTGCAATGCCAGAGAAGAAAGAGAGGAAAGAGACTAGCAAAGATGTTTTCAGCTTGAATGATGATACAGAAGAAGATAAAAGGGAATAGATTACGGCCTATTTATCGACTGGGAAGGGTGCAGGGCAATCTAGGCATTTCATGCAGTTGACAGTTCAATGTGCAAACATGTTGCTCTTAACTGTGTTTTATTAGCATTTTCATTTCATATCATCCTAGGAGTCATTGACTGGAGATGGAAGGGTTTAGCTATTAGTTCCTTAGAACAGTAATTTATCTCCGAATTGTGCTATGAACATGAGTTATGGTTTCAAAGCTCTATTTGAGAATCTAATATTGAATTTATTTATGTAAAAGTCTATATTGCTATAGAGCTTTTTTAAGAGCTTCTGGCCTGATGATG

Ace file of the UniGene biog3_v1.0_unigene6305

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23124	87/87

Source	Descriptions	Term	Type	Identity
AutoFact	Lung seven transmembrane receptor [Medicago truncatula]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	transmembrane protein 87b	-	-	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transmembrane receptor, eukaryota	IPR009637	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRU5

Fln msg:

Fln protein: MCGKQVTYTYNVAGLNILLLWLCLNPGVNVVEGSVHKYVGAKFSGNGNAFLLYGGSEGLRASSSSSSSLGKDVVSGVNDGRSFIRLDNITFHRRKEIAAQDSNMDHDTGLVQVLIFEAADRDNIGGSPYGGQKAICCTPDLSKLENCKQGEVIWRPSAKDATWPYVTSVRFHGDATEVTLETINVPITMTGMYNLYFIFCEPKLKGLVMTGKTIWKNPTGYLPGRMAPLMTFYGLMSLAYLLLGIVWFSQYARFWREILQLQNCITLVISLGMFEMTLLYFEYANFNATGIRSTGITIWAVTFGAVKRTISRLIILVVSMGYGVVRPTLGGLTSKVLLLGATFFLASELLDLVENVGSINDLSGKARLFLVLPVAIVDAFIVIWIFTSLSKTLEKLQARRSLAKLDIYRKFTNALAVAVFVSVAWIGYELYFKATDPFSERWQSAWVISAFWHVLSFSLLCVICALWAPSQNSTRYAYSDDVGEEFGEEETMSLTKSLAKVDGDENSAMPEKKERKETSKDVFSLNDDTEEDKRE*

Protein Length: 537

Fln nts: GAGACGAGATCAGATCTGCAGAGAAATGGAATAGGCGCGATCCTTGAT_-_ATGTGTGGAAAGCAAGTTACATATACATACAATGTGGCTGGTTTGAACATTCTTCTTCTATGGCTGTGCCTGAATCCTGGTGTGAACGTAGTAGAGGGATCTGTACACAAATATGTTGGAGCAAAGTTCAGTGGCAATGGAAATGCTTTTCTGCTGTATGGAGGAAGCGAGGGTCTCAGGGCTTCCTCCTCTTCTTCATCTTCCTTGGGTAAGGACGTGGTATCTGGCGTTAACGATGGAAGATCTTTTATCAGGTTAGATAATATAACATTTCATAGGAGAAAAGAAATTGCTGCTCAAGATTCAAATATGGACCATGACACTGGGCTTGTTCAGGTTCTTATCTTTGAGGCAGCTGATCGGGATAACATAGGTGGTTCACCCTATGGTGGTCAGAAGGCTATTTGCTGTACTCCAGATCTTTCAAAGCTAGAAAATTGCAAACAGGGTGAAGTCATTTGGCGGCCTTCAGCGAAAGATGCCACCTGGCCTTATGTGACAAGCGTCCGCTTCCATGGAGATGCTACAGAAGTCACCTTGGAAACTATAAATGTGCCAATTACCATGACAGGAATGTATAACTTGTATTTTATATTTTGTGAACCTAAACTTAAAGGGCTGGTAATGACTGGAAAGACGATATGGAAAAATCCCACAGGTTATCTACCTGGGAGGATGGCACCACTAATGACCTTTTATGGTCTAATGTCCCTTGCATACCTTCTCCTTGGGATTGTTTGGTTTTCCCAGTATGCCAGATTTTGGAGAGAAATTTTACAGCTTCAGAACTGTATTACTCTTGTTATTTCTTTGGGTATGTTTGAAATGACACTGTTGTACTTTGAATACGCAAATTTCAATGCAACTGGAATCAGGTCCACAGGTATTACTATTTGGGCTGTTACATTTGGTGCTGTCAAGAGAACCATATCCCGACTCATTATCTTGGTTGTTTCAATGGGCTATGGTGTAGTAAGGCCCACTCTAGGAGGTCTTACTTCGAAGGTGCTTCTTCTGGGAGCAACATTCTTCCTGGCATCTGAGTTGCTTGATCTTGTGGAGAATGTGGGGTCCATCAATGATCTATCAGGAAAAGCCAGATTGTTTCTTGTTCTGCCAGTTGCAATTGTGGACGCTTTCATCGTTATTTGGATTTTTACTTCTTTGTCTAAAACATTGGAGAAACTTCAGGCAAGGAGGTCGCTTGCTAAGCTAGACATTTACAGGAAGTTCACTAATGCATTGGCAGTTGCTGTATTTGTTTCCGTGGCATGGATTGGATATGAGCTGTATTTCAAGGCAACTGATCCGTTCAGTGAGCGTTGGCAGAGTGCATGGGTTATAAGTGCATTTTGGCATGTTCTTTCATTTTCTTTGCTTTGTGTCATCTGTGCACTTTGGGCTCCATCTCAAAACTCCACTAGATATGCTTACTCAGATGATGTAGGAGAAGAGTTTGGTGAAGAAGAGACGATGTCTTTGACCAAGTCGTTAGCAAAGGTTGACGGTGATGAAAACTCTGCAATGCCAGAGAAGAAAGAGAGGAAAGAGACTAGCAAAGATGTTTTCAGCTTGAATGATGATACAGAAGAAGATAAAAGGGAATAG___ATTACGGCCTATTTATCGACTGGGAAGGGTGCAGGGCAATCTAGGCATTTCATGCAGTTGACAGTTCAATGTGCAAACATGTTGCTCTTAACTGTGTTTTATTAGCATTTTCATTTCATATCATCCTAGGAGTCATTGACTGGAGATGGAAGGGTTTAGCTATTAGTTCCTTAGAACAGTAATTTATCTCCGAATTGTGCTATGAACATGAGTTATGGTTTCAAAGCTCTATTTGAGAATCTAATATTGAATTTATTTATGTAAAAGTCTATATTGCTATAGAGCTTTTTTAAGAGCTTCTGGCCTGATGATG

Fln Alignment:

Contig6305___VEGSVHKYVGAKFSGNGNAFLLYGGSEGLRAXXXXXXXLGKDVVSGVNDGRSFIRLDNITFHRRKEIAAQDSNMDHDTGLVQVLIFEAADRDNIGGSPYGGQKAICCTPDLSKLENCKQGEVIWRPSAKDATWPYVTSVRFHGDATEVTLETINVPITMTGMYNLYFIFCEPKLKGLVMTGKTIWKNPTGYLPGRMAPLMTFYGLMSLAYLLLGIVWFSQYARFWREILQLQNCITLVISLGMFEMTLLYFEYANFNATGIRSTGITIWAVTFGAVKRTISRLIILVVSMGYGVVRPTLGGLTSKVLLLGATFFLASELLDLVENVGSINDLSGKARLFLVLPVAIVDAFIVIWIFTSLSKTLEKLQARRSLAKLDIYRKFTNALAVAVFVSVAWIGYELYFKATDPFSERWQSAWVISAFWHVLSFSLLCVICALWAPSQNSTRYAYSDDVGEEFGEEETMSLTKSLAKVDGDENSAMPEKKERKETSKDVFSLNDDTEEDKRE
C0PRU5_________________VEGSVHEYKDASFKESGDAYLLYGGNEGMRASIDSDQKHG----SGPNNGKSYIKFENITLRRTREAAAQHSGMEHRTGLVQAIIFEASDRDDIGGSLYGGRKAICCTPDLAKMEGCKQGEVIRRQSAGDPKWPHVLNIEFSGDDIATTMSAQSVTIPKTGMYNLYFIFCEPTLKGLLLDGKTIWKNPTGYLPGRMAPLMTFYGFMSLVYLLLGVIWFSQYIRFWKDVLQLQNCITLVIALGMFEMTLWYFEYANFNATGIRPMGITFWAVTFGAVKKTVARLLLLVVSMGYGVVRPTLGGLTSKVLLLGATYFLASELLDVVENVGTIDDLSGNTRLFLVLPVAILDAFLILWIFTSLSKTLEKLQARRRLAKLEIYRKFTNALAVAVIVSVAWIGYELYFKATDPFSERWQSAWIITGFWHMLSFALLCVLCVLWAPSQSSTRYAYSEEVGEDFDEEEALALTTSTSVVDVD---VKQEMKERKAVNTDVFSLDEDTEEDKRE

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
15	33			66	0.997452
16	33	66			0.997452
19		66		33	0.997452
153	20			80	0.995493
155		80		20	0.995493
156	80		20		0.995493
157		80		20	0.995493
199	16			83	0.994512
200	16	83			0.994512
620			80	20	1.0
621			80	20	1.0
654	11	88			0.923564
656	88			11	0.923564
671	12		87		0.992554
672		12		87	0.992554
674	88			11	0.923564
678	11	88			0.923564
682	88			11	0.923564
694	11		88		0.923564
695	85	14			0.993533
697	85			14	0.993533
698	85			14	0.993533
724		16	83		0.994512
727			83	16	0.994512
751	20			80	0.995493
755	80			20	0.995493
776	14	85			0.993533
777	14			85	0.993533
780			85	14	0.993533
805	11	88			0.923564
874	88	11			0.923564
877			88	11	0.923564
1054			87	12	0.999964
1063	13			86	0.999973
1066			85	14	0.999981
1134	10			90	0.90298
1137		90		10	0.90298
1242			83	16	0.999991
1431	11			88	0.923564
1432	11		88		0.923564
1464	87	12			0.992554
1466		87		12	0.992554
1541	12		87		0.992554
1569	14			85	0.993533
1570		85		14	0.993533
1632		14	85		0.993533
1635	85			14	0.993533
1766		33		66	0.997452
1767	33			66	0.997452
1842	25			75	0.996473
1908			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain