SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6292

Length: 1840 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6292 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene330	43/51
SustainPine v2.0	sp_v2.0_unigene25734	6/51

Source	Descriptions	Term	Type	Identity
AutoFact	SET domain protein n=1 Tax=Populus trichocarpa RepID=B9N8U9_POPTR	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	rubisco methyltransferase family protein	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Rubisco LS methyltransferase, substrate-binding domain	IPR015353	-	0.0	-
Sma3	SET domain	IPR001214	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUD7

Fln msg: your sequence is shorter than subject: 466 - 507

Fln protein: LPMVVYSADTLTASSQHGENRKHAVRGTDEKVDLKSWMHRHGLPPCKVTLKERPSPDGKQKPIKYVAASEDLQPGDVAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKQSFWHCFIRELDRQRGRGQLAIESPLLWSSEELNYFTGSPMKEIVLERSAGIKKEYEELDTIWFMAGSLFKQYPYDIPTEAFPFEIFKQAFVAVQSCVVHLQNVSLAQRFALVPLGPPLLSYKSNCKAMLKAVGDFVQLEVDREYKAGEPIVVWCGPQPNARLLLNYGFVDEDNPHDRLIVEVSLDTKDPLYQDKRIIAQRNGKLSVQTFNIYIGREKEAVLDILPYLRLSYVSDPSEMQSVLSSQGPVCPVSPCTERAVLDQLSRYFKERLAGYPTTASEDEIVLADPTTNAKRKVATQLVLIEKKMLNSCLAAVNEIIDQLPDLAVTPCPSPYSPIMK*

Protein Length: 467

Fln nts: CTTCCCATGGTTGTCTATTCCGCAGACACGCTCACGGCGAGTTCGCAGCACGGGGAGAACAGGAAGCACGCAGTCCGCGGTACTGATGAGAAAGTGGATTTGAAGTCGTGGATGCACCGGCATGGCCTTCCGCCTTGCAAGGTTACGCTGAAGGAAAGGCCGTCGCCAGACGGGAAGCAGAAACCCATTAAGTACGTCGCTGCCAGCGAAGATCTCCAGCCGGGGGACGTGGCATTTTCTGTTCCAAACTCGCTTGTCGTCACGCTGGAAAGAGTGCTGGGAAACGAAACTATTGCGGAGTTGCTTACTACAAACAAGCTTTCAGAGTTAGCCTGCTTAGCATTATATTTGATGTATGAGAAAAAGCAAGGCAAACAGTCTTTCTGGCACTGTTTCATCCGTGAGCTTGATCGGCAGCGAGGAAGAGGGCAGCTAGCTATTGAGTCCCCACTTTTATGGTCATCAGAGGAGTTAAACTATTTTACTGGTAGTCCAATGAAGGAAATTGTGTTGGAAAGGAGTGCAGGCATTAAGAAAGAATATGAAGAGCTTGATACCATCTGGTTTATGGCGGGTTCATTGTTTAAGCAATATCCCTATGACATCCCTACTGAGGCTTTTCCATTTGAAATTTTCAAGCAAGCATTTGTTGCAGTTCAGTCTTGTGTTGTGCACTTGCAGAATGTCAGTTTAGCACAAAGGTTTGCTTTGGTTCCACTAGGGCCACCTCTTCTATCCTACAAGAGCAACTGTAAAGCAATGTTGAAAGCTGTAGGTGATTTTGTCCAACTGGAAGTAGACCGTGAATACAAAGCAGGAGAACCAATTGTTGTCTGGTGTGGCCCTCAGCCAAATGCAAGATTGTTGTTGAATTATGGTTTTGTGGATGAAGATAACCCTCATGACCGTCTTATAGTGGAGGTATCACTGGATACAAAGGACCCTCTGTACCAGGACAAAAGAATTATTGCACAGAGAAATGGCAAACTGTCTGTGCAGACATTTAATATATACATTGGAAGGGAAAAGGAAGCTGTCTTAGATATACTTCCCTACTTACGACTTTCCTATGTATCAGATCCTTCTGAGATGCAGTCAGTTTTATCCTCGCAAGGTCCTGTCTGTCCAGTAAGCCCATGTACAGAAAGAGCAGTTTTGGACCAGTTATCCAGATACTTCAAAGAACGACTTGCGGGTTATCCAACAACTGCTAGCGAAGATGAAATAGTGCTTGCGGATCCGACAACAAACGCAAAAAGGAAGGTGGCAACGCAGTTGGTATTAATAGAGAAGAAAATGCTGAATTCATGTCTAGCAGCAGTTAATGAAATAATTGATCAGCTACCTGATCTTGCTGTGACTCCATGTCCAAGTCCTTACAGTCCTATAATGAAATGA___TTGTTGTTTGGGATCTAATTGTGACATGTCATGCAGTAAGGGCCTTGCTGTAGGTCATTTCATCCTGTAAGTAACGTCCTCCATATAAGAATTTCATCATGCTTTTTCATGCTGAGGTTTTGGACTAAAACTGAACAACTTATAGGAATATTTATGTAGGTTTAGATAGTTCTTGCTTTCCCATATTGCAGGTCCATATTCTAACAACAGATATCCAGAGGGTTTGTTTTTGGCTGAAGTCTTGGAATATAAAGCTTCCTCTACGTACAGGGATGTTTTCCTTAATATGCACATTGCAGTTAATGGAAAGGTACAAAGATATGCAAGTGAATTTCCTGAAAGAAGTGGAGAATAAATGATGACCCAATGCTTTGAAATGTTGGTGGTGAAAACATTAGAGGAATCATTTTCGTTGGAGTCGAAAAGTTTCCACGAGGACATT

Fln Alignment:

Contig6292___PMVVYSADTLTASSQHGENRKHAVRGTDEKVDLKSWMHRHGLPPCKVTLKERPSPDGKQKPIKYVAASEDLQPGDVAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKQSFWHCFIRELDRQRGRGQLAIESPLLWSSEELNYFTGSPMKEIVLERSAGIKKEYEELDTIWFMAGSLFKQYPYDIPTEAFPFEIFKQAFVAVQSCVVHLQNVSLAQRFALVPLGPPLLSYKSNCKAMLKAVGDFVQLEVDREYKAGEPIVVWCGPQPNARLLLNYGFVDEDNPHDRLIVEVSLDTKDPLYQDKRIIAQRNGKLSVQTFNIYIGREKEAVLDILPYLRLSYVSDPSEMQSVLSSQGPVCPVSPCTERAVLDQLSRYFKERLAGYPTTASEDEIVLADPTTNAKRKVATQLVLIEKKMLNSCLAAVNEIIDQLPDLAVTPCPSPYSPIMK
A9NUD7_________________PMVVYSADTLTASSQHGEDKKDAIRGKEEEVDLKSWMHRHGLPPCRVMLKERPSPDGKHKPIKYVAASEDLQPGDVAFSIPNSLIVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGNQSFWRPFIRELDRQRGRGQLAVESPLLWSSEELKYFTGSPMKEIMLERNSGIKREYEELDTVWFMAGSLFKQYPYDIPTEAFPFEIFKQAFVAVQSCVVHLQNVNLARRFALVPLGPPLLSYKSNCKAMLKAVGDSVQLEVDREYKAGEPIVVWCGPQPNARLLLNYGFVDEDNPHDRLIVEVSLDTKDPLYQDKRIIAQRNGKLSVQTFNIYIGREKEAVLDMLPYLRLAYVSDPSEMQSVLSSQGPVCPVSPCTERAVLDQLSRYFRERLAGYPTTASEDEIVLADPTTNPKRQVATQLVLIEKKMLNSCLAAVYEIIDQLPDLAVTPCPSPYSPILK

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
89	33			66	1.0
92			33	66	1.0
94		66		33	0.997452
557	25			75	0.996473
559	75		25		0.996473
560	75			25	0.996473
596	25		75		1.0
597	25			75	1.0
635	11		88		0.923564
663	10			90	0.90298
769		10		90	0.90298
771		90		10	0.90298
772	90			10	0.90298
958	20	80			0.995493
959	20	80			0.995493
960	80	20			0.995493
964	80	20			0.995493
1501	83		16		0.994512
1600		25	75		0.996473
1601	25			75	0.996473
1610			66	33	0.997452
1611	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain