SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6290

Length: 1371 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6290

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3279	33/33

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-L-arabinofuranosidase n=2 Tax=Fragaria x ananassa RepID=B3F8C4_FRAAN	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	alpha-l-arabinofuranosidase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	0.0	81%

Source	KEGGs	Term	Type	Identity
Blast2go	Starch and sucrose metabolism	00500		81%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		81%
Blast2go	Metabolic pathways	01100		81%
Blast2go	Alpha-N-arabinofuranosidase.	EC:3.2.1.55	-	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	L-arabinose metabolic process	GO:0046373	Biological Process	81%
Blast2go	xylan catabolic process	GO:0045493	Biological Process	81%
Blast2go	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	81%
Blast2go	alpha-N-arabinofuranosidase activity	GO:0046556	Molecular Function	81%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	81%
Blast2go	vacuole	GO:0005773	Cellular Component	81%
Blast2go	apoplast	GO:0048046	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha-L-arabinofuranosidase, C-terminal	IPR010720	-	0.0	-
Sma3	Carbohydrate-binding, CenC-like	IPR003305	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKP3

Fln msg: Separated hits, possible frame ERROR between 956 and 958, your sequence is shorter than subject: 378 - 662

Fln protein: RPGHFGDVWGYWTDDGLGFYEFLQLAEDLNTLPIWVFNNGISHTDEVSTSTILPFIQDILNGFEFARGSSNSTWGSVRAAMGHPDPFNLKYVAIGNEDCGKQYYRGNYIKFYYAIKLAYPDIQIISNCDGSSKPLDHPADLYDYHIYTSASNIFSMVHTFDNAPRSGPKAFVSEYAVTGTDAGHGSLLAAIGEAGFLIGLETNSDVVEMASYAPLFVNVNNRRWNPDAIVFDSWQQYGTPSYWVQQFFRESSGAVLLPVTIQENATSALVASAIRWSSLEDGEDYIRVKAVNFGSSLLTLDITISGLPVGSIRSSGSxxTILTSDNLMDENSFDMPQKIAPRATELVNSGTDMNISLPPYSVTVLDLQLDHVMHSAI*

Protein Length: 379

Fln nts: AGAGGCCTGGTCATTTTGGTGATGTATGGGGCTATTGGACTGATGATGGGCTTGGGTTTTATGAGTTTCTTCAACTTGCTGAGGATCTAAATACATTACCAATATGGGTCTTCAATAATGGCATCAGCCACACTGATGAGGTTTCGACTTCAACTATTCTTCCTTTCATTCAGGATATCTTGAACGGTTTTGAATTTGCTAGAGGTTCTTCCAATTCAACATGGGGTTCTGTCCGTGCAGCAATGGGACATCCTGATCCTTTCAATTTGAAATATGTTGCCATTGGAAATGAAGATTGCGGCAAACAATATTACCGAGGCAATTATATTAAATTTTATTATGCAATAAAATTGGCTTATCCTGATATCCAAATTATCTCCAACTGTGATGGATCTTCTAAGCCACTGGATCATCCTGCAGACCTGTATGATTACCATATTTATACATCTGCAAGCAACATCTTTTCTATGGTTCATACATTTGATAATGCACCACGAAGTGGCCCAAAGGCATTTGTTAGTGAATACGCTGTTACTGGTACAGATGCTGGACATGGTAGTTTATTGGCGGCAATAGGGGAAGCTGGTTTTCTTATTGGGTTAGAAACAAACAGTGATGTAGTTGAGATGGCAAGCTATGCACCATTGTTTGTCAATGTTAATAACCGCAGATGGAACCCAGATGCTATTGTATTTGATTCATGGCAGCAATATGGGACTCCAAGCTACTGGGTGCAACAATTCTTCAGGGAATCAAGTGGTGCTGTACTTCTTCCTGTTACAATACAAGAAAATGCTACATCTGCTTTGGTTGCTTCTGCAATAAGGTGGAGTAGCTTAGAGGATGGAGAAGATTACATCAGAGTGAAGGCTGTAAATTTTGGCAGTTCTCTGCTGACACTTGACATTACGATAAGTGGCTTACCTGTTGGAAGCATACGCTCCTCAGGTTCAAAxxxAACCATTCTGACATCTGATAATTTGATGGATGAAAATTCTTTTGACATGCCACAAAAGATCGCGCCTAGAGCAACAGAACTTGTAAATAGCGGCACTGATATGAACATTTCTCTGCCCCCATATTCTGTTACTGTACTGGATTTGCAACTGGATCATGTTATGCATTCAGCAATCTGAACCAATTTATTCAAGTGGGATCTACAGCGTTTGAAAAAAATCACAATCAATTCCTCAAGGATTTTCGTCTCACAACAATGCCCTATATTGATGGTGAAAATGATTGGGAAACTGAAACTATTCAATTCCTGTGATGTTAAGATAATGCACTCTGAAGGCATAAGAATTGGGTAGGAAACATTTCAATCAGAGATTCTGCATTATGTTAAGCATGAAATTCAGAAACTTTCCATATCT

Fln Alignment:

Contig6290___RPGHFGDVWGYWTDDGLGFYEFLQLAEDLNTLPIWVFNNGISHTDEVSTSTILPFIQDILNGFEFARGSSNSTWGSVRAAMGHPDPFNLKYVAIGNEDCGKQYYRGNYIKFYYAIKLAYPDIQIISNCDGSSKPLDHPADLYDYHIYTSASNIFSMVHTFDNAPRSGPKAFVSEYAVTGTDAGHGSLLAAIGEAGFLIGLETNSDVVEMASYAPLFVNVNNRRWNPDAIVFDSWQQYGTPSYWVQQFFRESSGAVLLPVTIQENATSALVASAIRWSSLEDGEDYIRVKAVNFGSSLLTLDITISGLPVGSIRSSGSKxTILTSDNLMDENSFDMPQKIAPRATELVNSGTDMNISLPPYSVTVLDLQLDHVMHSAI
B8LKP3_________________RPGHFGDVWDYWTDDGLGFYEFLQLAEDLNTLPIWVFNNGISHNDEVSTSTILPFIQDILNGIEFARGPSNSTWGSVRAAMGHPDPFNLKYVAIGNEDCGKPYYRGNYIKFYYAIKTAYPDIQIISNCDGSSKSLDHPADLYDYHIYTSASNIFSMAHSFDNTARSGPKAFVSEYAVTGNDAGHGSLLAAIGEAGFLIGLETNSDVVEMASYAPLFVNTNNRRWNPDAIVFDSWQQYGTPSYWVQHFFRESSGAVLLPVIIQENATSALIASAIRWNSLENGEDYIRVKAVNFGSSLLTLDISISGLPVGSISSSGSKxTVLTSDNLMDENSFDKPEKIVPRATEIGNSGTDMNISLPPHSVTVLDLRLDHAMHSAI

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
477	33			66	0.997452
478	66			33	0.997452
479		66	33		0.997452
480	66			33	0.997452
684	20		80		0.995493
688		80		20	0.995493
1001	33			66	0.997452
1002	33			66	0.997452
1005	66			33	0.997452
1194	25			75	0.996473
1197	75			25	0.996473
1198			75	25	0.996473
1337	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain