SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6265

Length: 837 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6265 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10862	7/21
SustainPine v2.0	sp_v2.0_unigene29817	14/21

Source	Descriptions	Term	Type	Identity
AutoFact	Serine carboxypeptidase S28 family protein [Arabidopsis thaliana] gb\|ABF57288.1\| At5g65760 [Arabidopsis thaliana] dbj\|BAF00060.1\| lysosomal Pro-X carboxypeptidase [Arabidopsis thaliana] gb\|AED98102.1\| Serine carboxypeptidase S28 family protein [Arabidopsi	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	serine carboxypeptidase s28 family protein	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S28	IPR008758	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPX2

Fln msg: Distance to subject end: 198 aas, your sequence is shorter than subject: 278 - 509

Fln protein: CGEFSIINREKSFLQSSQYEYETKYFTQRLDHFSFKNYENSTFQQRYLINDKYWLGAERMGPIFLYCGNEGYIDWFAVNTGFMWDIAPQFGALLVFPEHRYYGESMPYGNQSVAYKDGDSLSYLTAEQALADFATLIVDLKKNLSAKACPVVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPSDTFYNLVSNDFKRESENCFKVIQQSWKALETYGERDEGLQNLSKKFRMCRDLKSTEEVQNWLSSAYSNLAMVDYPYPASFLMPLP

Protein Length: 279

Fln nts: AATGTGGCGAGTTTTCAATTATTAACCGAGAGAAGTCATTTTTACAATCATCACAGTACGAGTACGAGACCAAGTATTTCACACAAAGGCTTGATCATTTTAGCTTCAAGAATTATGAGAATTCAACGTTCCAGCAGCGTTATCTCATAAATGACAAGTACTGGCTAGGGGCAGAACGTATGGGGCCTATCTTTCTTTATTGCGGGAATGAGGGCTACATTGACTGGTTTGCTGTGAACACTGGATTTATGTGGGACATAGCACCTCAGTTCGGAGCTCTGCTCGTCTTTCCAGAACACCGCTACTATGGAGAGTCTATGCCCTATGGCAATCAGAGTGTGGCCTACAAGGATGGAGATTCACTATCTTATCTCACAGCTGAGCAAGCACTGGCTGATTTTGCAACTTTGATAGTAGACCTAAAAAAGAACCTATCTGCCAAGGCTTGTCCAGTTGTCTTGTTTGGTGGTTCTTATGGTGGAATGTTAGCTGCTTGGATGAGGTTGAAATATCCACATATTGCAATAGGTGCCCTAGCTTCATCTGCTCCAATATTGCAGTTTGAAGACATTGTACCATCTGATACATTCTACAATCTTGTTTCCAATGATTTCAAGCGGGAAAGTGAGAACTGTTTCAAGGTGATACAGCAATCATGGAAAGCATTGGAGACATATGGTGAAAGAGATGAAGGGTTACAAAATCTTAGCAAGAAGTTTCGCATGTGCAGGGATCTCAAAAGCACAGAGGAAGTACAAAACTGGTTAAGCTCAGCATACAGTAACCTTGCTATGGTGGACTATCCATATCCAGCTAGTTTCTTAATGCCTTTGCCTG

Fln Alignment:

Contig6265___GEFSIINREKSFLQSSQYEYETKYFTQRLDHFSFKNYENSTFQQRYLINDKYWLGAERMGPIFLYCGNEGYIDWFAVNTGFMWDIAPQFGALLVFPEHRYYGESMPYGNQSVAYKDGDSLSYLTAEQALADFATLIVDLKKNLSAKACPVVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPSDTFYNLVSNDFKRESENCFKVIQQSWKALETYGERDEGLQNLSKKFRMCRDLKSTEEVQNWLSSAYSNLAMVDYPYPASFLMPLP
B8LPX2_________________GEFSTLNREKSFLQSSQYEYETKYFTQRLDHFSFKNHKNSTFQQRYLINDKYWLGAERMGPIFYYCGNEGYIDWFAVNTGFMWDIAPQFGALLVFPEHRYYGESMPYGSQSMAYKDGDSLSYLTAEQALADFATLIVDLKKNLSAEACPVVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPSDTFYNLVSNDFKRESENCFKVIQQSWKALETYGERDEGLQNLSKKFRMCRDLNSTDEIEDWLNSAYSNLAMVDYPYPASFLMPLP

SNPs (tot: 5)

Position	A %	C %	T %	Probability
569	11		88	0.923564
570	11	88		0.923564
571		88	11	0.923564
631	25	75		0.996473
632		75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain