SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6264

Length: 431 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene6264
AATGTAGCATTGTTTATGTGGTTTTGAAGCAAGAATTATTAACAGAGGTTCAGAATGCAGTGAGAGTGCTAATGAGGACATTTTGCTCTTCTTTTTCCAGCTAGATTTAACTACTCGCATTCAGTGTGCTTTAAACACAGATCAATATGAAATAGCTCAACAATTACGGAGCAAGCTTTCAGAGGTTGAGCAAGAGGTTGCTAGACAAAGGGAATCAAAGATGGGATCAACATCATCCAAGGATGAAGCTCAAGACAAAGCAATAGCGATTTTGCGTCTACGAACTGATCTGCAAAAAGCTATTGAGGATGAGGATTATGTCTATGCTGCTGAGTTACGCAATAAAATTTCCAAGCTTGAGGCAGAGTCTTTGGCAGCAGCGGCCAAGGCATTGGCTTACCAGAATGTAGAGTATGCATTTCGACTTGGGC

Ace file of the UniGene biog3_v1.0_unigene6264 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene462	6/8
SustainPine v2.0	sp_v2.0_unigene34838	2/8

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam08755, YccV-like, Hemimethylated DNA-binding protein YccV like	-	-	5.0e-30	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	uvrb uvrc motif-containing protein	-	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide-excision repair	GO:0006289	Biological Process	81%
Blast2go	DNA binding	GO:0003677	Molecular Function	81%
Blast2go	nuclease activity	GO:0004518	Molecular Function	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Hemimethylated DNA-binding domain	IPR011722	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKM7

Fln msg: Distance to subject end: 129 aas, your sequence is shorter than subject: 143 - 340

Fln protein: M*HCLCGFEARIINRGSECSESANEDILLFFFQLDLTTRIQCALNTDQYEIAQQLRSKLSEVEQEVARQRESKMGSTSSKDEAQDKAIAILRLRTDLQKAIEDEDYVYAAELRNKISKLEAESLAAAAKALAYQNVEYAFRLG

Protein Length: 144

Fln nts: AATGTAGCATTGTTTATGTGGTTTTGAAGCAAGAATTATTAACAGAGGTTCAGAATGCAGTGAGAGTGCTAATGAGGACATTTTGCTCTTCTTTTTCCAGCTAGATTTAACTACTCGCATTCAGTGTGCTTTAAACACAGATCAATATGAAATAGCTCAACAATTACGGAGCAAGCTTTCAGAGGTTGAGCAAGAGGTTGCTAGACAAAGGGAATCAAAGATGGGATCAACATCATCCAAGGATGAAGCTCAAGACAAAGCAATAGCGATTTTGCGTCTACGAACTGATCTGCAAAAAGCTATTGAGGATGAGGATTATGTCTATGCTGCTGAGTTACGCAATAAAATTTCCAAGCTTGAGGCAGAGTCTTTGGCAGCAGCGGCCAAGGCATTGGCTTACCAGAATGTAGAGTATGCATTTCGACTTGGGC

Fln Alignment:

Contig6264___M*HCLCGFEARIINRG--------------------------------------------------SECSESANEDILLFFFQLDLTTRIQCALNTDQYEIAQQLRSKLSEVEQEVARQRESKMGSTSSKDEAQDKAIAILRLRTDLQKAIEDEDYVYAAELRNKIXXXXXXXXXXXXXXXAYQNVEYAFRLG
B8LKM7_________________MKHTLCGFEARIINRGAIRISLNRRHHELSHALHFSLMSSVDSQRRGLRVIAAGMSKGNDPTVTAISECSESANEDILLFFFQLDLTTRIQCALNSDQYEIAQQLRSKLAEVEQEVARQRESKMGSTSSKDEAQDKAIAILRLRTDLQKAIEDEDYAYAAELRNKISKLEADSLAAAAKALAYQNAEYAFRLG

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
200		16		83	0.994512
201	16		83		0.994512
202	83			16	0.994512
245	16	83			0.994512
249	83			16	0.994512
250		83		16	0.994512
256	80	20			0.995493
313	14		85		0.993533
314	85	14			0.993533
317	14		71	14	0.984337
321			83	16	0.994512
423		66	33		0.997452
424	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain