SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6234

Length: 1995 nt

UniGene Fasta

>biog3_v1.0_unigene6234
TGTCCACCCCATCGCTAAAGGAAGGGTTTTCAACGACGCTGTCGAGGGTTTGAAGTTTGGTCTGTATACATAAGAGTATAATTCTATCTCTGGCCAGTTGTATAAGATATTGGACTCGCCAGAAGAAGTAATTAGCGAATGTGTTTCAAATTACTGTACTCCTGCGGAGGTGTGGAGAAGCAGCTTTGGAGGAAAACTTATACATCGAGCTGTTTCTCGTGGATCACAGCAGTATTTTAGTTTATTCCACGGAAGTTTAGAATTATAAAAGATAAACAAGATAAATCATGAAGTTTGGTAAGCGTCTGCAGATCCAGATCGACGAAACTCTTCCCGAGTGGCGTGATAAATTTCTGTCATACAAGCCTCTCAAAAAGCGACTAAAACAGGTCGCGGGCCCAGAGTGGTTTACAGCTGTTGGATTTTGTGCAGCTAGTCCTCAACATGATGGAAGCTCGTCATCTGTGGTAGACAAATTTATCCAAGAGCTCAGAAAAGGTAGTGCTGCCCTTGGTGAGATTGTAGATAAACCAGCAAATGAGAGTGCAGCTGAAGCAGCTAGCTCGAAGCCTGCTTCAGAAATTGGTGCAGGAATCAATGATGAAGTGTCAAGTGAGTCTAGCACCCATGCCCCTGCAGAAAGGAACTCTGAAAGAAAGACAGGAAATTTTGATGAGGAAGATTTTATTAATCTTATAAATGAGGAGCTTGAGAAATTTAATAACTTCTTCTTAGAAAAGGAGGAGGAGTATGTGATTCATCTCCAGGAGCTAAAAGAAAGGATTGAAAGATTGAAAGAACGTAGCAGCAGACAAAATGGAACATACACCTCAGAGTATGAATTCAATGAAGAAACAGTGAAGATCCGTAGAGACATTGTTGCCATCCATGGGGAGATGGTACTGCTTGAGAACTATAGTTCTCTCAATTTTATAGGTTTGGTGAAAATTTTGAAAAAATATGACAAAAGAACGGGTGCATTGTTACGTTTGCCTTTCACCCAAAGTGTTCTTCAGCAACCATTCTTCACCACTGAACTGCTTTCAAAGCTTGTTCGTGAATGTGAGGCTAACCTTCAGAGCATCTTTCCCTCCATTCCCGTAGATGAAAGGGGGGATTGTGCTACTGACCAGTCCAGGGATGAAAACAATGAAGCAAATGCACAGGAAACCTTGTCACTTCAAGGAGACACTGGCATCTACAGAAGTACTCTTGCGGCTTTGAGAACCATTCAGGATCTCCGGAAGGGTAGCTCTACATATAATCCCTTATCTTTTGCGCCCTTTGTTCCAGGTGATATTGAGGATGGCTTGGTTGCTGGTGGCAACGATAAGTCAAAGTCAAATTCTTCACATTCCAAGACCAATGGAAATGCACAGAATGAGGAAAATGTTACGTCAACCACTAGAGTGAATATGGTGCAGCCCTCTCTTGAAACAAATGAGGGTTTTACTTCCAGTGAACAGGAAGAAGTGGCTGTTCCTTGAAGGAAAGGAGAATTTTGTTTTTCAGCAGAATGTGAAAGCACTGATTTACTCTTAATTTATGGATTTCCTCCGCATATGAGAAGGCAAACTGATTTTTATGCAGATTGTTGTGCCAGAACTTCACCAAATTACTGGCAGTTGATAACAATACTACAGCAGCATCTGTATCAGATAGTGGTGATTGGTTAGATATATTTGTTTTGTATACATGTCGAGCATATCTCCTGAGTCCTGACTGCAAAATGTCGATGCTGACGCTAGTCTAAACTGAAGCTGAAAGGCATTGCAAACTAATTATTGGTATTCCAATTCTGTTTAAAATTTGAACTTAACTGCCTGCAACATCATCTTATGTAATTTTCTTTATTGTGACCGCTCAAGAATAAGCTTAACCATAAAATCTTACCGAGATGGACACTGCAATGCGAGTTCTTCGCTGTTGAATACATCTCCTGTATAGTACTTCCCCCATTTGCTGCTTTACATAAACTTCTCATAAAATGACATT

Ace file of the UniGene biog3_v1.0_unigene6234

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17462	100/101

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SPX domain-containing protein 4 n=2 Tax=Arabidopsis RepID=SPX4_ARATH	-	-	2.94273e-44	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Blast2go	spx domain-containing protein 4	-	-	0.0	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	SPX, N-terminal	IPR004331	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNU0

Fln msg: your sequence is longer than subject: 400 - 238

Fln protein: MKFGKRLQIQIDETLPEWRDKFLSYKPLKKRLKQVAGPEWFTAVGFCAASPQHDGSSSSVVDKFIQELRKGSAALGEIVDKPANESAAEAASSKPASEIGAGINDEVSSESSTHAPAERNSERKTGNFDEEDFINLINEELEKFNNFFLEKEEEYVIHLQELKERIERLKERSSRQNGTYTSEYEFNEETVKIRRDIVAIHGEMVLLENYSSLNFIGLVKILKKYDKRTGALLRLPFTQSVLQQPFFTTELLSKLVRECEANLQSIFPSIPVDERGDCATDQSRDENNEANAQETLSLQGDTGIYRSTLAALRTIQDLRKGSSTYNPLSFAPFVPGDIEDGLVAGGNDKSKSNSSHSKTNGNAQNEENVTSTTRVNMVQPSLETNEGFTSSEQEEVAVP*

Protein Length: 401

Fln nts: TGTCCACCCCATCGCTAAAGGAAGGGTTTTCAACGACGCTGTCGAGGGTTTGAAGTTTGGTCTGTATACATAAGAGTATAATTCTATCTCTGGCCAGTTGTATAAGATATTGGACTCGCCAGAAGAAGTAATTAGCGAATGTGTTTCAAATTACTGTACTCCTGCGGAGGTGTGGAGAAGCAGCTTTGGAGGAAAACTTATACATCGAGCTGTTTCTCGTGGATCACAGCAGTATTTTAGTTTATTCCACGGAAGTTTAGAATTATAAAAGATAAACAAGATAAATC_-_ATGAAGTTTGGTAAGCGTCTGCAGATCCAGATCGACGAAACTCTTCCCGAGTGGCGTGATAAATTTCTGTCATACAAGCCTCTCAAAAAGCGACTAAAACAGGTCGCGGGCCCAGAGTGGTTTACAGCTGTTGGATTTTGTGCAGCTAGTCCTCAACATGATGGAAGCTCGTCATCTGTGGTAGACAAATTTATCCAAGAGCTCAGAAAAGGTAGTGCTGCCCTTGGTGAGATTGTAGATAAACCAGCAAATGAGAGTGCAGCTGAAGCAGCTAGCTCGAAGCCTGCTTCAGAAATTGGTGCAGGAATCAATGATGAAGTGTCAAGTGAGTCTAGCACCCATGCCCCTGCAGAAAGGAACTCTGAAAGAAAGACAGGAAATTTTGATGAGGAAGATTTTATTAATCTTATAAATGAGGAGCTTGAGAAATTTAATAACTTCTTCTTAGAAAAGGAGGAGGAGTATGTGATTCATCTCCAGGAGCTAAAAGAAAGGATTGAAAGATTGAAAGAACGTAGCAGCAGACAAAATGGAACATACACCTCAGAGTATGAATTCAATGAAGAAACAGTGAAGATCCGTAGAGACATTGTTGCCATCCATGGGGAGATGGTACTGCTTGAGAACTATAGTTCTCTCAATTTTATAGGTTTGGTGAAAATTTTGAAAAAATATGACAAAAGAACGGGTGCATTGTTACGTTTGCCTTTCACCCAAAGTGTTCTTCAGCAACCATTCTTCACCACTGAACTGCTTTCAAAGCTTGTTCGTGAATGTGAGGCTAACCTTCAGAGCATCTTTCCCTCCATTCCCGTAGATGAAAGGGGGGATTGTGCTACTGACCAGTCCAGGGATGAAAACAATGAAGCAAATGCACAGGAAACCTTGTCACTTCAAGGAGACACTGGCATCTACAGAAGTACTCTTGCGGCTTTGAGAACCATTCAGGATCTCCGGAAGGGTAGCTCTACATATAATCCCTTATCTTTTGCGCCCTTTGTTCCAGGTGATATTGAGGATGGCTTGGTTGCTGGTGGCAACGATAAGTCAAAGTCAAATTCTTCACATTCCAAGACCAATGGAAATGCACAGAATGAGGAAAATGTTACGTCAACCACTAGAGTGAATATGGTGCAGCCCTCTCTTGAAACAAATGAGGGTTTTACTTCCAGTGAACAGGAAGAAGTGGCTGTTCCTTGA___AGGAAAGGAGAATTTTGTTTTTCAGCAGAATGTGAAAGCACTGATTTACTCTTAATTTATGGATTTCCTCCGCATATGAGAAGGCAAACTGATTTTTATGCAGATTGTTGTGCCAGAACTTCACCAAATTACTGGCAGTTGATAACAATACTACAGCAGCATCTGTATCAGATAGTGGTGATTGGTTAGATATATTTGTTTTGTATACATGTCGAGCATATCTCCTGAGTCCTGACTGCAAAATGTCGATGCTGACGCTAGTCTAAACTGAAGCTGAAAGGCATTGCAAACTAATTATTGGTATTCCAATTCTGTTTAAAATTTGAACTTAACTGCCTGCAACATCATCTTATGTAATTTTCTTTATTGTGACCGCTCAAGAATAAGCTTAACCATAAAATCTTACCGAGATGGACACTGCAATGCGAGTTCTTCGCTGTTGAATACATCTCCTGTATAGTACTTCCCCCATTTGCTGCTTTACATAAACTTCTCATAAAATGACATT

Fln Alignment:

Contig6234___QNGTYTSEYEFNEETVKIRRDIVAIHGEMVLLENYSSLNFIGLVKILKKYDKRTGALLRLPFTQSVLQQPFFTTELLSKLVRECEANLQSIFPSIP------------------------------VDERGDCATDQSR--DENN----EANAQETLSLQGDTGIYRSTLAALRTIQDLRKGSSTYNPLSFAP
B8LNU0_________________QNATVFSQTEYNEEMIKLRKDIVNFHGEMVLLENYSALNYTGLAKILKKYDKRTGGLLRHPFIQKVLQQPFFTTEQLSKLISECENTLQSLFPDYPKSLLQVPAGPSSNGNQAEASSSAGNSDLQRLREPPPAATTQAEFGEENSPLKGKGDEDGDRDAEGMESIYRSTMAALRTMREIRRGSSTYSVFSLPP

SNPs (tot: 83)

Position	A %	C %	G %	T %	Probability
136	33		66		0.997452
137		66		33	0.997452
204		75		25	0.996473
205	75		25		0.996473
241	14		85		0.993533
243			14	85	0.993533
425	20			80	0.995493
426		20		80	0.995493
427	20			80	0.995493
428			80	20	0.995493
667	90	10			0.90298
672	11			88	0.923564
673		11	88		0.923564
676			88	11	0.923564
682		12	87		0.992554
696	12			87	0.992554
699	87			12	0.992554
706	14		85		0.993533
716	85	14			0.993533
724	85		14		0.993533
728	12			87	0.992554
729	14	85			0.993533
760	10	90			0.90298
763		90	10		0.90298
824		88		11	0.923564
825	88		11		0.923564
868	10	90			0.90298
869	10		90		0.90298
871	90		10		0.90298
872			90	10	0.90298
962	83		16		0.994512
992	16			83	0.994512
995	16	83			0.994512
1074		85		14	0.993533
1152		12		87	0.992554
1153	12		87		0.992554
1154	87			12	0.992554
1155	87			12	0.992554
1255	11			88	0.923564
1256		88		11	0.923564
1345	87	12			0.992554
1367	85		14		0.993533
1441	83			16	0.999991
1442	83			16	0.999991
1446		10	90		0.90298
1447	20		80		0.999996
1449	10			90	0.90298
1468	12		87		0.992554
1469	87	12			0.992554
1471			87	12	0.992554
1472	87			12	0.992554
1504	11			88	0.923564
1505		11	88		0.923564
1506	11			88	0.923564
1510	12			87	0.992554
1513			88	11	0.923564
1514		88		11	0.923564
1538	25			75	1.0
1539		75		25	1.0
1558		87	12		0.992554
1559		87		12	0.992554
1584	12			87	0.992554
1585		12		87	0.992554
1588			87	12	0.992554
1644	20		80		0.995493
1647			80	20	0.995493
1648		80		20	0.995493
1734	12			87	0.992554
1736	12		87		0.992554
1737	87			12	0.992554
1788	14		85		0.993533
1789		14	85		0.993533
1818	10			90	0.90298
1819	90	10			0.90298
1821		90		10	0.90298
1872		16		83	0.994512
1874	83			16	0.994512
1875			83	16	0.994512
1884	75		25		0.996473
1897			66	33	0.997452
1899	33		66		0.997452
1901	33			66	0.997452
1907		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain