SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6233

Length: 963 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6233 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16446	1/23
SustainPine v2.0	sp_v2.0_unigene27819	18/23
SustainPine v2.0	sp_v2.0_unigene60640	4/23

Source	Descriptions	Term	Type	Identity
AutoFact	glycine decarboxylase complex H-protein [Populus tremuloides]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	glycine decarboxylase complex h-protein	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	ATP binding	GO:0005524	Molecular Function	0.0	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Glycine cleavage H-protein	IPR002930	-	-
Sma3	Glycine cleavage H-protein, subgroup	IPR017453	-	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
187	33		66		0.997452
188	33	66			0.997452
191		66		33	0.997452
206	33	66			0.997452
228	25	75			0.996473
286	66		33		1.0
307	16		83		0.994512
309			16	83	0.994512
347	14	85			0.993533
348		14		85	0.993533
350		85		14	0.993533
556	14		85		0.993533
557		85		14	0.993533
558		85	14		0.993533
559	85			14	0.993533
692	75	25			0.996473
694		75		25	0.996473
695	75			25	0.996473
837	80	20			0.995493
839	20			80	0.995493
840		80		20	0.995493
843			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain