SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6222

Length: 1610 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6222

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15381	81/81

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome regulatory subunit N7 [Arabidopsis thaliana] ref\|NP_974611.1\| 26S proteasome regulatory subunit N7 [Arabidopsis thaliana] sp\|Q93Y35.1\|PSMD6_ARATH RecName: Full=Probable 26S proteasome non-ATPase regulatory subunit 6; AltName: Full=26S prote	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	26s proteasome non-atpase regulatory subunit 6	-	-	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	91%
Blast2go	proteasome complex	GO:0000502	Cellular Component	0.0	91%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT48

Fln msg:

Fln protein: MDPQEGKQEPKLVLAHKIFLLRHPDVPDIEKVELKNEVFNLIKAEDMANLYESLCEELGWEIDQSLLQTMGGKIEEELKKLDEKVSDAEENLGESEVREAHLAKSLYYIRIGDKEKALEQIKITEGKTVAVGQKMDLVFHTLQLGFFFMDFDLISKGIDKAKSLFDEGGDWERKNRLKVYEGLYCMSTRNFKKAAELFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVISKIPHLSDFLNSLYGCQYKSFFVAFAGLTDQIRLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTMEAMARAFGVSVDFIDRELSRFIAAGRLHCKIDKVVGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL*

Protein Length: 388

Fln nts: GTGTGTAACC_-_ATGGATCCCCAAGAAGGAAAGCAAGAGCCCAAGTTAGTGTTAGCCCACAAGATTTTTCTGCTCAGACATCCCGATGTTCCTGACATTGAAAAAGTCGAGCTCAAGAATGAGGTTTTCAATCTTATCAAGGCGGAGGACATGGCGAATTTGTACGAGTCATTATGCGAAGAATTAGGGTGGGAGATAGATCAAAGCCTTTTACAGACCATGGGGGGTAAGATAGAAGAAGAACTCAAGAAACTCGACGAAAAAGTTAGTGATGCAGAAGAGAATTTAGGTGAAAGTGAAGTAAGAGAGGCACATCTTGCCAAATCCTTGTACTACATACGCATTGGTGACAAGGAAAAAGCTTTGGAGCAAATCAAAATTACCGAGGGTAAAACAGTTGCTGTAGGCCAGAAGATGGACTTAGTTTTCCACACACTTCAGCTTGGGTTCTTTTTCATGGACTTTGATTTGATTTCGAAAGGCATTGATAAAGCTAAGAGTTTGTTCGACGAAGGGGGTGATTGGGAAAGGAAAAACCGACTGAAGGTGTATGAAGGCCTTTACTGTATGTCTACACGAAATTTCAAGAAAGCTGCTGAGCTATTTTTGGATTCTATTTCAACATTCACAACATATGAGCTTTTCCCATATGATACCTTCATATTCTACACTGTGCTGACGAGTATAATCTCACTGGACAGAGTCTCCCTAAAGCAAAAGGTGGTGGATGCACCTGAGATTTTGACTGTGATTAGCAAGATACCACATCTTTCAGACTTTTTGAATTCACTTTATGGCTGTCAATACAAGTCATTCTTTGTTGCATTTGCTGGCCTGACAGATCAAATAAGATTAGATCGCTACTTGCATCCACATTTCCGATATTACATGAGGGAAGTCCGCACTGTTGTTTATTCTCAGTTTCTAGAATCCTACAAGAGTGTAACCATGGAGGCTATGGCAAGAGCTTTTGGTGTTAGTGTTGATTTTATTGACAGAGAACTTTCTCGTTTCATAGCTGCAGGTAGGCTTCACTGCAAAATAGATAAAGTTGTTGGTGTTCTAGAAACTAACAGGCCGGATGCTAAAAATGCTCTCTATCAAGCAACTATCAAACAAGGAGACTTTTTGTTGAACCGCATTCAGAAACTCTCCAGAGTAATTGACCTTTAA___AAATAGTTCAGAAGTGACCCACTTTCCTTGCTGCTAAAGTGCCATTTTGAAATTTCACATTTAAGATGAAGGAAGCATTATCATTCCTTTAAAATTTCAGACTGTATTTCAAAGTTATTAGACTTTGGCATTTAATTGATTGCATTGTAAGTACACTTACGTCTTCCATTTGTATCAGTACACTAGTTTTCTTGGAAAGGTGGCAACAATAACGACGTGAAGTTAACTTAGTAAATTCTGTTTATCTCATTTAGATCTTTTAACCATGGCTGATTTTTTGAATGATCGCTTGGGTCATTGTTTTCCACTTTTGGCAATTGAAATAATTGCGCTGAAAGAAGTGAGATGCTCTCTACTACCCAAGTAGAGGAAGGTGCCACATAACGTAACACTAATAATCTATGAAAAAAATTAACATCAGAGTTTAACGAAAAACATT

Fln Alignment:

Contig6222___MDPQEGKQEPKLVLAHKIFLLRHPDVPDIEKVELKNEVFNLIKAEDMANLYESLCEELGWEIDQSLLQTMGGXXXXXXXXXXXXVSDAEENLGESEVREAHLAKSLYYIRIGDKEKALEQIKITEGKTVAVGQKMDLVFHTLQLGFFFMDFDLISKGIDKAKSLFDEGGDWERKNRLKVYEGLYCMSTRNFKKAAELFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVISKIPHLSDFLNSLYGCQYKSFFVAFAGLTDQIRLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTMEAMARAFGVSVDFIDRELSRFIAAGRLHCKIDKVVGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL
A9NT48_________________MDPQEGTQEPKLILAHKIFLLRHPDVPDIEKIELKNEVFNLIKAEDMANLYESLCGELGWDIDQDLLQTMRAKIEEELKKLDEKVSDAEENLGESEVREAHLAKSLYYIRIGDKEKALEQIKITEGKTVAVGQKMDLVFHTLQLGFFFMDFDLISKGIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAAELFLDSISTFTTYELFPYDNFIFYTVLTSIISLDRVSLKQKVVDAPEILAVISKIPHLSDFLNSLYGCQYKSFFVAFAGLTDQIRLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTMEAMARAFGVSVDFIDRELSRFIAAGRLHCKIDKVVGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1171	12	87			0.992554
1177	85	14			0.993533
1179	85			14	0.993533
1328	33			66	0.997452
1330		66		33	0.997452
1331	66		33		0.997452
1332		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain