SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6215

Length: 773 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6215 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6695	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase domain-containing protein [Arabidopsis thaliana] gb\|AAM19803.1\| At1g74320/F1O17_1 [Arabidopsis thaliana] gb\|AAM98234.1\| putative choline kinase [Arabidopsis thaliana] gb\|AAP42750.1\| At1g74320 [Arabidopsis thaliana] gb\|AEE35577.1\| protein ki	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	choline ethanolamine kinase	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Choline kinase.	EC:2.7.1.32	-	0.0	78%

Source	KEGGs	Term	Type	Identity
Blast2go	Glycerophospholipid metabolism	00564		78%
Blast2go	Metabolic pathways	01100		78%
Blast2go	Ethanolamine kinase.	EC:2.7.1.82	-	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerophospholipid metabolism	00564		0.0	78%
Blast2go	Metabolic pathways	01100		0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	78%
Blast2go	phosphorylation	GO:0016310	Biological Process	78%
Blast2go	choline kinase activity	GO:0004103	Molecular Function	78%
Blast2go	ethanolamine kinase activity	GO:0004305	Molecular Function	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Choline/ethanolamine kinase	IPR002573	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
543	60		20	20	0.99255
545			25	75	0.996473
721		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain