SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6196

Length: 779 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6196 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1773	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	boron transporter 4 [Arabidopsis thaliana] sp\|Q9XI23.1\|BOR4_ARATH RecName: Full=Boron transporter 4 gb\|AAD39673.1\|AC007591_38 Is a member of the PF\|00955 Anion exchanger family [Arabidopsis thaliana] gb\|AAL47440.1\| At1g15460/T16N11_24 [Arabidopsis thalian	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	anion exchanger family protein	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	borate transport	GO:0046713	Biological Process	74%
Blast2go	cellular response to boron-containing substance levels	GO:0080029	Biological Process	74%
Blast2go	inorganic anion exchanger activity	GO:0005452	Molecular Function	74%
Blast2go	borate efflux transmembrane transporter activity	GO:0080139	Molecular Function	74%
Blast2go	plasma membrane	GO:0005886	Cellular Component	74%
Blast2go	integral to membrane	GO:0016021	Cellular Component	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Bicarbonate transporter, eukaryotic	IPR003020	-	0.0	-
Sma3	Bicarbonate transporter, C-terminal	IPR011531	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
245		14		85	0.993533
281	14		85		0.993533
284			85	14	0.993533
285	85			14	0.993533
479	25			75	0.996473
480	25	75			0.996473
482	75		25		0.996473
483		75		25	0.996473
498	16		83		0.994512
499	83			16	0.994512
500	83		16		0.994512
568	16	83			0.994512
570	16			83	0.994512
573		83		16	0.994512
574		83		16	0.994512
638	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain