SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6176

Length: 1498 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6176

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7574	79/79

Source	Descriptions	Term	Type	Identity
AutoFact	Malate dehydrogenase n=2 Tax=Picea sitchensis RepID=A9NXT5_PICSI	-	-	96%
FL-Next	sp=Malate dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	malate dehydrogenase	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Malate dehydrogenase.	EC:1.1.1.37	-	0.0	90%

Source	KEGGs	Term	Identity
Blast2go	Citrate cycle (TCA cycle)	00020	90%
Blast2go	Pyruvate metabolism	00620	90%
Blast2go	Glyoxylate and dicarboxylate metabolism	00630	90%
Blast2go	Methane metabolism	00680	90%
Blast2go	Carbon fixation in photosynthetic organisms	00710	90%
Blast2go	Carbon fixation pathways in prokaryotes	00720	90%
Blast2go	Biosynthesis of phenylpropanoids	01061	90%
Blast2go	Biosynthesis of terpenoids and steroids	01062	90%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	90%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	90%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	90%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	90%
Blast2go	Biosynthesis of plant hormones	01070	90%
Blast2go	Metabolic pathways	01100	90%
Blast2go	Biosynthesis of secondary metabolites	01110	90%

Source	GOs	Term	Type	Identity
Blast2go	glyoxylate cycle	GO:0006097	Biological Process	90%
Blast2go	malate metabolic process	GO:0006108	Biological Process	90%
Blast2go	regulation of fatty acid beta-oxidation	GO:0031998	Biological Process	90%
Blast2go	tricarboxylic acid cycle	GO:0006099	Biological Process	90%
Blast2go	regulation of photorespiration	GO:0080093	Biological Process	90%
Blast2go	L-malate dehydrogenase activity	GO:0030060	Molecular Function	90%
Blast2go	binding	GO:0005488	Molecular Function	90%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	90%
Blast2go	vacuole	GO:0005773	Cellular Component	90%
Blast2go	glyoxysome	GO:0009514	Cellular Component	90%
Blast2go	apoplast	GO:0048046	Cellular Component	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQF2

Fln msg:

Fln protein: MQCSEQTTSFRIARISAHLRPPQREDGSILSRANCRAKGGAPGFKVAILGASGGIGQPLSLLMKMNPLVSVLHLYDVVNTPGVTADVSHMDTTAVVRGFLGKEQLESALVGMDLVIIPAGIPRKPGMTRDDLFKINAGIVQSLCEGVAKFCPRAIVNIISNPVNSTVAIAAEVFKRAGVYNPKLLMGVTTLDVARANTFVAEVLGVDPKAVNVPVVGGHAGVTILPLLSQVQPSCYFTKQEVEYLTNRIQNGGTEVVEAKSGAGSATLSMAYAAVKFADACLRGLHGDAEVIECAFVASEVTELPFFATKVQLGRGGIEVVFPLGPLNEYERVGLEQAKKELKASIEKGISFVRN*

Protein Length: 357

Fln nts: AATGTCTTGAGAAAAAATCAACGAGAAAT_-_ATGCAGTGCTCGGAGCAGACTACCAGCTTTCGCATTGCTCGAATTTCTGCTCATCTTCGGCCTCCCCAGAGGGAGGATGGTAGTATTCTCAGCAGAGCCAATTGCAGAGCCAAAGGCGGAGCCCCCGGGTTTAAAGTTGCAATTCTCGGGGCATCAGGAGGCATAGGACAACCGCTTTCCCTGTTGATGAAAATGAATCCATTGGTATCAGTTCTCCATCTTTATGATGTGGTCAACACTCCCGGTGTCACGGCAGACGTCAGTCATATGGACACAACTGCAGTGGTGCGTGGATTTCTGGGGAAGGAACAACTAGAAAGTGCTCTGGTAGGCATGGACCTTGTGATCATTCCTGCAGGAATCCCAAGAAAGCCGGGGATGACTCGTGACGATTTGTTCAAAATAAATGCAGGGATCGTCCAATCACTCTGTGAAGGAGTTGCCAAGTTCTGCCCTCGAGCAATTGTAAATATCATCAGTAATCCAGTCAACTCCACTGTAGCAATTGCAGCAGAGGTCTTCAAGAGAGCAGGAGTTTATAACCCCAAACTTTTGATGGGGGTCACCACTTTAGATGTCGCTAGAGCAAATACCTTTGTGGCTGAAGTTTTGGGTGTTGATCCAAAAGCGGTCAATGTCCCAGTTGTTGGCGGGCATGCTGGTGTCACTATTTTGCCACTTCTTTCCCAGGTACAACCATCATGTTATTTCACCAAACAGGAGGTGGAATACCTTACTAATCGCATTCAAAATGGAGGCACCGAGGTTGTTGAGGCAAAAAGTGGGGCAGGTTCTGCAACCTTATCAATGGCATATGCAGCAGTAAAATTTGCAGATGCTTGTCTAAGGGGCCTGCATGGTGATGCTGAGGTTATTGAATGTGCATTTGTTGCATCAGAGGTGACTGAGCTACCTTTCTTTGCAACAAAAGTTCAACTGGGTCGTGGTGGCATAGAAGTCGTTTTTCCTCTAGGCCCTCTGAATGAGTATGAAAGAGTTGGCTTAGAACAAGCAAAAAAGGAGTTGAAAGCAAGCATTGAAAAGGGCATTTCGTTCGTTCGGAATTGA___TTTCTTAGCCCTTTTTTCTTTATTTACCAAGAGATGGATTGAATGCTGTCTCTCGTCCGATTCATCCATGTAAAGGTTATGCTGTCGACCATCTCCCTATTCTTGTTGTTAATGCCCTCAACTATATATGTAGCCAGGACATGTTTGGACTTGATAGGTCTTGGATGTTTTGTCAGAGGATTTTCCATGCATGCTTCATTCACGCTTAGTTGATCAGTGTTTTCTTTGTCAGAGTTTTATCCAATTATAAGCTTAAATGGGGAAGATACAAATTCCTTAAAGACATTAATGTATCTATCATTTAGATGTGTTTACATATGAGCATGCCTGGTATGGGAAGAAAATCCATTGTAAGATTTTCACTAAGGTTTCATGACATGGGTTCTTACCACTGAAATGGT

Fln Alignment:

Contig6176___MQCSEQTTSFRIARISAHLRPPQREDGSILSRANCRAKGGAPGFKVAILGASGGIGQPLSLLMKMNPLVSVLHLYDVVNTPGVTADVSHMDTTAVVRGFLGKEQLESALVGMDLVIIPAGIPRKPGMTRDDLFKINAGIVQSLCEGVAKFCPRAIVNIISNPVNSTVAIAAEVFKRAGVYNPKLLMGVTTLDVARANTFVAEVLGVDPKAVNVPVVGGHAGVTILPLLSQVQPSCYFTKQEVEYLTNRIQNGGTEVVEAKSGAGSATLSMAYAAVKFADACLRGLHGDAEVIECAFVASEVTELPFFATKVQLGRGGIEVVFPLGPLNEYERVGLEQAKKELKASIEKGISFVRN
C0PQF2_________________MQCSEQTTSFRIARISAHLRPPQREDGGILSRGNCRAKGGAPGFKVAILGASGGIGQPLSMLMKMNPLVSVLHLYDVANTPGVTADLSHMDTTAVVRGFLGKEQLESALVGMDLVIIPAGVPRKPGMTRDDLFKINAGIVQSLCEGVAKFCPRAIVNIISNPVNSTVAIAAEVFKRAGVYNPKLLMGVTTLDVARANTFVAEVLGVDPKAVNVPVVGGHAGVTILPLLSQVQPSCYFTKQEVEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKYADACLRGLRGDADVIECAFVASEVTELPFFATKVQLGRGGIEVVFPLGPLNEYERAGLEQAKKELKASIEKGISFVRN

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
229		83		16	0.994512
398			85	14	0.993533
399	85			14	0.993533
402	16		83		0.994512
404	16	83			0.994512
405			85	14	0.993533
406			85	14	0.993533
418	12		87		0.992554
420		87		12	0.992554
623	11	88			0.923564
625	22			77	0.999999
627	14			85	0.999981
628	16		83		0.999991
631		8	75	16	0.99999
691	10		90		0.90298
947	10			90	0.90298
949	11			88	0.923564
1045	83			16	0.994512
1046	83			16	0.994512
1081	20			80	0.995493
1083	20		80		0.995493
1183	20			80	0.995493
1184			80	20	0.995493
1262		40		60	1.0
1285	10	90			0.90298
1289			90	10	0.90298
1293	11		88		0.923564
1300	12			87	0.992554
1303		87		12	0.992554
1304			87	12	0.992554
1434		33		66	0.997452
1437			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain