SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6174

Length: 1133 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6174 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10019	41/42

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF1279 domain containing protein	-	-	2.0e-26	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	transmembrane protein c20orf108	-	-	0.0	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF1279	IPR009688	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKZ4

Fln msg:

Fln protein: MMSTGLTLPSTPFATTDHQHNFTINNAIHRLPAHLCPIKTNTVISNRRRRRQLSICSAVQESNKVADKASSSSSSSDGGGESAEEITKRFGLEAGLWKVFTSKDNDNGEDAKGKKKNQAKELLARYGGAYLATSISLSLVSFGVCYLLINSGVDVQGLLDKVGIHTDETGEKVGTFALAYAAHKAASPIRFPPTVALTPIVASWFGKNSKEEEGEVKQ*

Protein Length: 220

Fln nts: AGCAGGACGAGCAGAAGCAGAGTAGCGCAGGAGCTGCTGGT_-_ATGATGTCAACAGGGCTCACCTTGCCGTCCACTCCGTTTGCAACAACTGATCATCAACACAATTTCACCATTAACAATGCTATCCATCGGTTACCTGCACATTTATGTCCCATCAAAACCAACACTGTTATTTCCAATAGAAGAAGAAGAAGACAACTCTCCATTTGTTCTGCAGTCCAAGAGTCAAATAAGGTAGCAGACAAAGCTAGCAGCAGTAGCAGTAGCAGCGACGGCGGAGGCGAATCAGCGGAAGAAATTACTAAAAGGTTTGGTCTAGAGGCTGGTCTATGGAAGGTATTCACCTCAAAGGATAATGATAATGGGGAGGATGCCAAGGGAAAGAAGAAAAATCAGGCTAAGGAGTTGTTAGCAAGATATGGTGGGGCATATCTGGCCACCTCTATCTCGCTTTCTTTAGTTTCCTTCGGTGTTTGTTACTTGCTCATAAATTCTGGAGTGGACGTGCAGGGCTTGCTTGACAAGGTTGGAATCCATACTGATGAAACAGGAGAAAAGGTGGGAACATTTGCACTTGCATACGCTGCACACAAAGCAGCTTCCCCGATCAGGTTTCCTCCAACCGTTGCCCTTACACCCATAGTTGCTAGTTGGTTCGGTAAAAATAGCAAGGAGGAGGAGGGGGAAGTAAAGCAATAA___AGTGGGCTGAGAACTTAAGTTGCTCCTATGAGAGGCTGAAGAGGCATTTGTATCTATTTATTGAGTCTTATGTTAGTTCATGTTATTATTAGAGAGTTAATTAGTGTAAAGTCCATATAGTGGGTATAACCCTGCCCTCTCATGTGTTTCTGGTTATATTTTTCTAGATATACTTGATTTTCACCGAATTCATAAGTTATAGTGCCCACTTTAGTAAAATAAGGAGATAACTCAACTTCAAGAGATTTTGTGCATGATATGCTCTCTGCATACAATACCCAGATAAGGTGGCAAACTTGATCAAAGTTTGAATTAGTAGATGACTTGTAATATCTCTGTTTGAGTATGATTTAGGCTATTCACACCCTTTGTTCCATATTGACATTGTATCTGAAACTTCCAATAAAATATGTAAGTCTTTGTCAGAAGTACATT

Fln Alignment:

Contig6174___MMSTGLTLPSTPFATTDHQHNFTINNAIHRLPAHLCPIKTNTVISNRRRRRQLSICSAVQESNKVXXXXXXXXXXXXXXXXXXXEITKRFGLEAGLWKVFTSKDNDNGEDAKGKKKNQAKELLARYGGAYLATSISLSLVSFGVCYLLINSGVDVQGLLDKVGIHTDETGEKVGTFALAYAAHKAASPIRFPPTVALTPIVASWFGKNSKEEEGEVKQ
A9NKZ4_________________MMSTGLTLPSTPFATTDQQHNFNNNNALHRLPTHLFPFKTHAVIANRRRGRRLSICSAIQESNKVVDKPSSSSSNGGGESAEE--VTKRFGLEAGLWKIFTSKDDDTGENAKGKKKNQAKELLTRYGGAYLATSISLSLVSFSVCYLLINAGVDVQSLLDKVGIHTDETGEKVGTFALAYAAHKAASPIRFPPTVALTPIVAGWFGKNNKEEEGESKQ

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
230	33		66		0.997452
231	33		66		0.997452
232			66	33	0.997452
233		66	33		0.997452
234	66			33	0.997452
267	25			75	0.996473
270		75	25		0.996473
329			25	75	0.996473
348	75	25			0.996473
355		75		25	0.996473
430	33		50	16	1.0
431	16	50	16	16	0.988986
432		50	16	33	1.0
433		66	16	16	0.988813
434	83			16	0.994512
452	14	85			0.993533
453	14	85			0.993533
454		85		14	0.993533
455		85	14		0.993533
496	16			83	0.994512
497	16		83		0.994512
498			83	16	0.994512
584		23		76	1.0
596	76		23		1.0
608	76		23		1.0
715		90		10	0.90298
716	90		10		0.90298
740	10	90			0.90298
742			88	11	0.923564
765	12			87	0.992554
766		87		12	0.992554
767		87	12		0.992554
799		71		28	1.0
966	87		12		0.992554
967		87		12	0.992554
982	12			87	0.992554
994			85	14	0.993533
1004		85		14	0.993533
1031	85		14		0.993533
1059		80		20	0.995493
1060			80	20	0.995493
1076	33			66	0.997452
1077		33	66		0.997452
1079			66	33	0.997452
1080		66		33	0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
453	464	CCT CCT CCT CCT	12
940	954	TCT TCT TCT TCT TCT	15

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain