SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6172

Length: 828 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6172

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13762	8/13
SustainPine v2.0	sp_v2.0_unigene16588	3/13
SustainPine v2.0	sp_v2.0_unigene61352	1/13

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoglycerate mutase-like protein [Arabidopsis thaliana] emb\|CAB81831.1\| putative protein [Arabidopsis thaliana] gb\|ABD91496.1\| At3g60450 [Arabidopsis thaliana] gb\|AEE80063.1\| phosphoglycerate mutase-like protein [Arabidopsis thaliana]	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	phosphoglycerate mutase-like protein	-	-	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	0.0	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPK4

Fln msg: Separated hits, possible frame ERROR between 301 and 303, and possible frame ERROR between 608 and 610, your sequence is shorter than subject: 239 - 317

Fln protein: MLDNYDPEWIRSAQRPWDPPLTDAGKKEARETGERLRTQGWNITRVICSPFLRCIQTAAEVVTALCAVQDHPLAIDPSKVKVSIEYGLCEVMNYIAIRTxxPSSPDISWTLDRSELEAILPAGTVDHSVEPVLPELPHWSEKTEKAHERYSKTIQALADKFPQENVLCVTHGEGVGVSVSTFKKDVIVHAVEYCAYSHSQRSxYFGPSTNGLNTEKFHVLTESGQSGIRFVTSKKIME*

Protein Length: 240

Fln nts: AATGTTGGACAATTACGATCCGGAGTGGATTCGCTCGGCACAGAGGCCCTGGGATCCTCCATTGACCGACGCTGGCAAAAAAGAGGCTCGGGAGACGGGCGAAAGGCTGAGAACGCAGGGGTGGAATATAACTAGAGTGATCTGTTCCCCGTTCTTGCGTTGTATTCAAACTGCGGCCGAGGTCGTTACAGCTCTCTGCGCTGTGCAGGATCACCCCCTTGCCATCGATCCTTCTAAGGTCAAGGTGTCAATAGAATATGGTTTGTGTGAGGTAATGAATTACATTGCGATAAGAACCCCxxxGCCTTCTTCACCAGACATTAGCTGGACACTTGACCGTTCTGAACTAGAAGCTATTTTACCAGCTGGAACGGTGGACCATTCTGTAGAGCCTGTATTGCCAGAGCTGCCCCATTGGTCAGAGAAAACTGAAAAAGCGCACGAGAGATACTCAAAAACGATTCAAGCACTGGCAGATAAATTTCCACAAGAGAATGTTCTATGTGTTACTCATGGTGAAGGTGTTGGAGTTTCAGTTTCTACATTTAAAAAGGATGTAATTGTTCACGCAGTAGAATATTGTGCGTATTCTCACTCTCAGAGATCCxxxTACTTTGGCCCTTCAACAAATGGGCTGAATACTGAAAAGTTTCACGTTTTGACAGAATCAGGCCAATCAGGGATTCGATTTGTAACAAGTAAAAAAATCATGGAGTAATTATACAAGTGCTATTGTTGTGCTTTATATTTGTTTAAAATATGTATCACAGAGAGATGGATGTGCATTATGAAACAATGAAACAGGATTCAAGATATTTTTTCATGTGCGCTT

Fln Alignment:

Contig6172___LDNYDPEWIRSAQRPWDPPLTDAGKKEARETGERLRTQGWNITRVICSPFLRCIQTAAEVVTALCAVQDHPLAIDPSKVKVSIEYGLCEVMNYIAIRTPxPSSPDISWTLDRSELEAILPAGTVDHSVEPVLPELPHWSEKTEKAHERYSKTIQALADKFPQENVLCVTHGEGVGVSVSTFKKDVIVHAVEYCAYSHSQRSIxFGPSTNGLNTEKFHVLTESGQSGIRF
A9NPK4_________________MDNYDPEWIASAPRPWDPPLTDDGKKEARKTGERLRTQGWNITRVICSPFLRCIQTAAEVVTALCAVQDQPLAIDPSKVKVSIEYGLCEVMNQFAIRTPxPSSPDISWTLDRSELEAILPAGTMDHSVEPVWPELPHWLEKTEKSHERYSKAIQALADKFPRENVLCVTHGEGVGVSVSAFKKDVIVNAVEYCAYSHSQRSIxFGSSTDGLNAERFHVLTESDQSGIRF

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
528	25		75		0.996473
562		25		75	0.996473
563	25		75		0.996473
573		12		87	0.992554
574	87		12		0.992554
576	87		12		0.992554
586	37		62		1.0
601	37		62		1.0
612	12			87	0.992554
618		57		42	1.0
633		57		42	1.0
635	57		42		1.0
636	85	14			0.993533
638		42		57	1.0
639	85			14	0.993533
663		14	85		0.993533
665	85			14	0.993533
671		66		33	1.0
680	40		60		1.0
690	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain