SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6163

Length: 488 nt

UniGene Fasta

>biog3_v1.0_unigene6163
AATGTACATCTTCAAGCACCTGCAGTTGGTGAGGGAGAGGGACCAATTGCTTGTGAGCACGAGGTTGAAAAGGATGCTGCATTTGCCTTGGGACTCCTTGCAGTGAAGCCAGAGCATCAACGACTCATTGCAGATGCAGGTGCTCTTTCCTGTCTGGTTTCCTTGTTAAAAAGACGTGGAAATGGTTCGAATGATCGTGCTGTTAATGGTGTCCTTCGAAGAGCTGCTGATGCTATCACAAATCTGGCTCATGAAAATGGCACCATCAAAACTTGCATCAGGACGGAGGGAGGAATTCCGCCTCTAGTTGATTTGCTTGAGTCAACTGATACCAAGGTGCAGCGAGCAGCAGCAGGTGCATTGCGTACTTTAGCATTCAAAAATGAAGCAAACAAGAATCAGATTGTTGAATGCAATGCTCTTCCCACCCTTATTTCATGTTGCGTTCTGAGGATGTTGGCATCCACTATGAGGCGGTGGGAGTAATT

Ace file of the UniGene biog3_v1.0_unigene6163

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17386	7/8

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BTB multi-domain protein	-	-	5.0e-26	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	protein	-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	82%
Blast2go	negative regulation of seed germination	GO:0010187	Biological Process	82%
Blast2go	response to salt stress	GO:0009651	Biological Process	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	BTB/POZ	IPR013069	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADE7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 250 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 162 - 386

Fln protein: NVHLQAPAVGEGEGPIACEHEVEKDAAFALGLLAVKPEHQRLIADAGALSCLVSLLKRRGNGSNDRAVNGVLRRAADAITNLAHENGTIKTCIRTEGGIPPLVDLLESTDTKVQRAAAGALRTLAFKNEANKNQIVECNALPTLISCCVLRMLASTMRRWE*

Protein Length: 163

Fln nts: A_-_ATGTACATCTTCAAGCACCTGCAGTTGGTGAGGGAGAGGGACCAATTGCTTGTGAGCACGAGGTTGAAAAGGATGCTGCATTTGCCTTGGGACTCCTTGCAGTGAAGCCAGAGCATCAACGACTCATTGCAGATGCAGGTGCTCTTTCCTGTCTGGTTTCCTTGTTAAAAAGACGTGGAAATGGTTCGAATGATCGTGCTGTTAATGGTGTCCTTCGAAGAGCTGCTGATGCTATCACAAATCTGGCTCATGAAAATGGCACCATCAAAACTTGCATCAGGACGGAGGGAGGAATTCCGCCTCTAGTTGATTTGCTTGAGTCAACTGATACCAAGGTGCAGCGAGCAGCAGCAGGTGCATTGCGTACTTTAGCATTCAAAAATGAAGCAAACAAGAATCAGATTGTTGAATGCAATGCTCTTCCCACCCTTATTTCATGTTGCGTTCTGAGGATGTTGGCATCCACTATGAGGCGGTGGGAGTAATT

Fln Alignment:

Contig6163___RAADAITNLAHENGTIKTCIRTEGGIPPLVDLLESTDTKVQRAAAGALRTLAFKNEANKNQIVECNALPTLI
D5ADE7_________________RAAKEIRRLTKTSAKSRAYLAAAGVIVPLVSMLKSANLEAKEAAVLALLNLAVGNERNKVRIVKAGAIPTLV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
245		80	20		0.995493
248		20	80		0.995493
250	20	80			0.995493
279	80		20		0.995493
281		80		20	0.995493
282	80	20			0.995493
321	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain