SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6149

Length: 2021 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene6149
GAACAGCAGGAACCATATTTGTTCTGTTCATACTCTGGAGAAAGCATGCAGCAGGGCAAGTTTCCTCTGTTCAAATGGCCCTGGGAAAGCCTCAACAACTACAAGTATTATCTATATGTGCCCTTAGCACTAATGGCTGCTCATGAAATATGGTTTCGTGGAAAACATAATGATTACTGGTTCGTGTACGTTCTCGTAATATCTTTCTTAAGGTGTGTGATATACCAAACTTGGCACCTTTATTCTCGAGCAGATTTCTTTCAAAGGGACAACAAATTCACCCTTTCTCTACCGATTTCGATCAGATTGACAGAGAATTACACTGGGATAATTATATAATATTTCAAGCTTGGGTGGCAACTTTGGGCTATTGTTTTTTCCTGGGTTAAGCAACCTTCCAATCTGGAATTACAGAGGGATGATCTCAGTCTTGCTGCTGCACATGGGCCCAACTGAGCTACTTTACTACTGCATTCATAGATCTTTTCACAGAGGTTCCTTATTTGAAAATTACCATTCTCTTCACCATGCATCCACCAGGCCTGAACCTTCAACAGCTGGTACCACCTCTTTCTTGGAGCAGTTGGTGATGGTTTCATTGATGACGATTCCCATATTTGGGGTGGTTTTGATGGGCGAGGGATCTATTGGCATGTTCTTTGTATACTTCCTGGGGTTTGATTTCATGAAGTTTATGATTCACTCAAATGCTGAGGTAGTTCCCCTGTGGCTTTTTCGTACGTTTCCATCGCTCAAGTATCTTCTAGTGACGCCCTCGTATCATCATGTGCATCACACCAAACTGAACTCAAATTATTGCCTCTTTATGCCTCTATACGATTATTTGGGAGGGACATTGAACCAAGATGCCTTTAATCTCCATTTTAACATGCGTTGCCAAGGCCAGAAGAGGAGAGCTCCAGATCTTGTGTTCTTGGGTCATGGTGTAGACTTCACAGGCCTTGTTCATGTTCCATATTTTGGACGATCTTTTGCCGCACAGCCATGTTCTTCTCAATGGTATGTGTGGCCTATTATGCCACTCATCTGGCTTGGTTTCTTTGGATGGCAGTTTACAAACACACATATAATCTCGAGGTACACTATTGGAGAGTTTAATCAGGAAACATGGGCTATACCGCGACTTGGTTTTCAGTTTTTCCTGCCATTTGGAAAGGATAAAATCAACGAACTTATTGAGGAGGCCATTCTTGAAGCAGATAGAATGGGAGTGAAAGTAATTTCTCTCGCAGGTCTAGTTAAGAATGAGGTCTTGAATGGAGGGGGACAACTATTTGTGAACAAGCATCCTAATCTTCACATTCGGGTGGCCCATGGAAATACTTTAACGACAGCTGTGCTTTTACATGAACTTCCACACGATGTAGATGCAGTATTCCTCACTGGCTCAACGTCAAAAATTGGCAAGGCTATTGCTCTCTACCTCTGCAAGAAACGAGTTAGAGTCTTGATGTTTACAGCATCCTTTGAGCGATTTAAAGCAGTGAGGAATCAAGCCCCTGCTGAATATCAACAATACCTCGAACATGTTTCTAAATATGAAGCAGGCAGGTTTTGCAAGACATGGATCATAGGCAAATGGGCAGGCTACGAAGATCAAATGTGGGCTCCTTCAGGAACCCACTTTTACCAGTTTACTATACCAATGATTATTGAATTCAGGAAAGATTGCACGTATGGAGGTTCATCAGCACTTAAATTACCAGACACCGCCAGAGGCGTGAATGGCTGTGAGCATAAGATGCCGAGAAGAGTAATACACGCATGCCATGCAGGAGGGTTGATACATGCTCTTGAAGGCTATGAGCATCATGAAGTTGGGGCAATCGATGTAGATCGCCTTGATATTGTATGGGAGGCAGCAATGAAACATGGACTCAGGCCTGTTTCACAAAGCAAGATTCAGTAATTGATTTCTATTTACATTAGATTGGAATGTTGGTTTATTTAAGTATCGGTTCTCAATCGCTGGCCCAGTCATTCCTCTATCTAATAAAGGT

Ace file of the UniGene biog3_v1.0_unigene6149 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene106	51/52

Source	Descriptions	Term	Type	Identity
AutoFact	Wax2_C multi-domain protein	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	protein wax2-like	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	wax biosynthetic process	GO:0010025	Biological Process	70%
Blast2go	pollen sperm cell differentiation	GO:0048235	Biological Process	70%
Blast2go	cuticle hydrocarbon biosynthetic process	GO:0006723	Biological Process	70%
Blast2go	binding	GO:0005488	Molecular Function	70%
Blast2go	catalytic activity	GO:0003824	Molecular Function	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Fatty acid hydroxylase	IPR006694	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A835

Fln msg: Separated hits, possible frame ERROR between 246 and 404, No stop codon before M and low homology subject,

Fln protein: MQQGKFPLFKWPWESLNNYKYYLYVPLALMAAHEIWFRGKHNDYWFVYVLVISFLRCVIYQTWHLYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxWNYRGMISVLLLHMGPTELLYYCIHRSFHRGSLFENYHSLHHASTRPEPSTAGTTSFLEQLVMVSLMTIPIFGVVLMGEGSIGMFFVYFLGFDFMKFMIHSNAEVVPLWLFRTFPSLKYLLVTPSYHHVHHTKLNSNYCLFMPLYDYLGGTLNQDAFNLHFNMRCQGQKRRAPDLVFLGHGVDFTGLVHVPYFGRSFAAQPCSSQWYVWPIMPLIWLGFFGWQFTNTHIISRYTIGEFNQETWAIPRLGFQFFLPFGKDKINELIEEAILEADRMGVKVISLAGLVKNEVLNGGGQLFVNKHPNLHIRVAHGNTLTTAVLLHELPHDVDAVFLTGSTSKIGKAIALYLCKKRVRVLMFTASFERFKAVRNQAPAEYQQYLEHVSKYEAGRFCKTWIIGKWAGYEDQMWAPSGTHFYQFTIPMIIEFRKDCTYGGSSALKLPDTARGVNGCEHKMPRRVIHACHAGGLIHALEGYEHHEVGAIDVDRLDIVWEAAMKHGLRPVSQSKIQ*

Protein Length: 630

Fln nts: GAACAGCAGGAACCATATTTGTTCTGTTCATACTCTGGAGAAAGC_-_ATGCAGCAGGGCAAGTTTCCTCTGTTCAAATGGCCCTGGGAAAGCCTCAACAACTACAAGTATTATCTATATGTGCCCTTAGCACTAATGGCTGCTCATGAAATATGGTTTCGTGGAAAACATAATGATTACTGGTTCGTGTACGTTCTCGTAATATCTTTCTTAAGGTGTGTGATATACCAAACTTGGCACCTTTATTCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTGGAATTACAGAGGGATGATCTCAGTCTTGCTGCTGCACATGGGCCCAACTGAGCTACTTTACTACTGCATTCATAGATCTTTTCACAGAGGTTCCTTATTTGAAAATTACCATTCTCTTCACCATGCATCCACCAGGCCTGAACCTTCAACAGCTGGTACCACCTCTTTCTTGGAGCAGTTGGTGATGGTTTCATTGATGACGATTCCCATATTTGGGGTGGTTTTGATGGGCGAGGGATCTATTGGCATGTTCTTTGTATACTTCCTGGGGTTTGATTTCATGAAGTTTATGATTCACTCAAATGCTGAGGTAGTTCCCCTGTGGCTTTTTCGTACGTTTCCATCGCTCAAGTATCTTCTAGTGACGCCCTCGTATCATCATGTGCATCACACCAAACTGAACTCAAATTATTGCCTCTTTATGCCTCTATACGATTATTTGGGAGGGACATTGAACCAAGATGCCTTTAATCTCCATTTTAACATGCGTTGCCAAGGCCAGAAGAGGAGAGCTCCAGATCTTGTGTTCTTGGGTCATGGTGTAGACTTCACAGGCCTTGTTCATGTTCCATATTTTGGACGATCTTTTGCCGCACAGCCATGTTCTTCTCAATGGTATGTGTGGCCTATTATGCCACTCATCTGGCTTGGTTTCTTTGGATGGCAGTTTACAAACACACATATAATCTCGAGGTACACTATTGGAGAGTTTAATCAGGAAACATGGGCTATACCGCGACTTGGTTTTCAGTTTTTCCTGCCATTTGGAAAGGATAAAATCAACGAACTTATTGAGGAGGCCATTCTTGAAGCAGATAGAATGGGAGTGAAAGTAATTTCTCTCGCAGGTCTAGTTAAGAATGAGGTCTTGAATGGAGGGGGACAACTATTTGTGAACAAGCATCCTAATCTTCACATTCGGGTGGCCCATGGAAATACTTTAACGACAGCTGTGCTTTTACATGAACTTCCACACGATGTAGATGCAGTATTCCTCACTGGCTCAACGTCAAAAATTGGCAAGGCTATTGCTCTCTACCTCTGCAAGAAACGAGTTAGAGTCTTGATGTTTACAGCATCCTTTGAGCGATTTAAAGCAGTGAGGAATCAAGCCCCTGCTGAATATCAACAATACCTCGAACATGTTTCTAAATATGAAGCAGGCAGGTTTTGCAAGACATGGATCATAGGCAAATGGGCAGGCTACGAAGATCAAATGTGGGCTCCTTCAGGAACCCACTTTTACCAGTTTACTATACCAATGATTATTGAATTCAGGAAAGATTGCACGTATGGAGGTTCATCAGCACTTAAATTACCAGACACCGCCAGAGGCGTGAATGGCTGTGAGCATAAGATGCCGAGAAGAGTAATACACGCATGCCATGCAGGAGGGTTGATACATGCTCTTGAAGGCTATGAGCATCATGAAGTTGGGGCAATCGATGTAGATCGCCTTGATATTGTATGGGAGGCAGCAATGAAACATGGACTCAGGCCTGTTTCACAAAGCAAGATTCAGTAA___TTGATTTCTATTTACATTAGATTGGAATGTTGGTTTATTTAAGTATCGGTTCTCAATCGCTGGCCCAGTCATTCCTCTATCTAATAAAGGT

Fln Alignment:

Contig6149___LFKWPWESLNNYKYYLYVPLALMAAHEIWFRGKHNDYWFVYVLVISFLRCVIYQTWHLYSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxWNYRGMISVLLLHMGPTELLYYCIHRSFHRGSLFENYHSLHHASTRPEPSTAGTTSFLEQLVMVSLMTIPIFGVVLMGEGSIGMFFVYFLGFDFMKFMIHSNAEVVPLWLFRTFPSLKYLLVTPSYHHVHHTKLNSNYCLFMPLYDYLGGTLNQDAFNLHFNMRCQGQKRRAPDLVFLGHGVDFTGLVHVPYFGRSFAAQPCSSQWYVWPIMPLIW-LGFFGWQFTNTHIISRYTIGEFNQETWAIPRLGFQFFLPFGKDKINXXXXXXXXXADRMGVKVISLAGLVKNEVLNGGGQLFVNKHPNLHIRVAHGNTLTTAVLLHELPHDVDAVFLTGSTSKIGKAIALYLCKKRVRVLMFTASFERFKAVRNQAPAEYQQYLEHVSKYEAGRFCKTWIIGKWAGYEDQMWAPSGTHFYQFTIPMIIEFRKDCTYGGSSALKLPDTARGVNGCEHKMPRRVIHACHAGGLIHALEGYEHHEVGAIDVDRLDIVWEAAMKHGLRPV
D5A835_________________LLDWPWAYLESLKYVLYGPLIAKAVHTNLYGGKEADNWCFHILLLTSLRYVTYQLWATFSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxWNAGGLICLAILRMGPAEVLYYWAHRAFHKDFLFQRYHSLHHAAIVLQPQTAGTATFLEHIGLTIIMAVPMVGASWMGGASMGMIYIYCLLFDFLRYMGHSNVEIVPETIFRCLPPLKYLIYTPLYHTLHHTEMDTNFCPFMPLYDYLGHTINSKSWDLHRSMSA-GQVEDVPDYVFLAHIVDVLSSLHVRFLLRGFCSTPFATWWFLLPLWPVVIPVALAMWVWAKTFVNTGHRLKGRLHQTWIVPRFGFQYFIPFAQAGINNLIQDAILSADKMGVKVISLAALNKNEALNGGGTLFVNRLPDLRVRVVHGNTLTAAVILNELNPDVKEVFLTGATSKLGRVIALYLCRKGIRVMMLTYSKERFKSIQSEAPPEFQNFLVQVTKYEAAQNCKTWIVGKWIAYKEQTWAPVGCHLHQFVVPPIFELRKDCTYGKLAGMQLPDAVEGLSTCEYTMPRRCVHACHAGGILHSLEGWEHHEVGAIDVNKIDMVWEAALKHGFKPM

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
395	33		66		0.997452
396		66		33	0.997452
397		66	33		0.997452
398		66		33	0.997452
550		75		25	0.996473
551	75		25		0.996473
686	33			66	0.997452
699	33	66			0.997452
700		66		33	0.997452
701		66	33		0.997452
702			66	33	0.997452
913	28	71			1.0
915		71	28		1.0
934		12	87		0.992554
1201	90			10	0.90298
1202	88	11			0.923564
1204			88	11	0.923564
1205	88			11	0.923564
1305	12		87		0.992554
1306	87	12			0.992554
1308		87		12	0.992554
1335	87		12		0.992554
1336		87		12	0.992554
1404		83		16	0.994512
1405		83		16	0.994512
1415	20		80		0.995493
1416		20	80		0.995493
1418	85			14	0.993533
1479	12		87		0.992554
1561	16		83		0.994512
1563	80			20	0.995493
1590	33		66		0.997452
1593			66	33	0.997452
1594		66		33	0.997452
1775		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain