SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6147

Length: 656 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene6147 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8320	3/7
SustainPine v2.0	sp_v2.0_unigene11396	3/7

Source	Descriptions	Term	Type	Identity
AutoFact	Acyl-CoA thioesterase, putative n=1 Tax=Ricinus communis RepID=B9T2I4_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	thioesterase family protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go		GO:0016291	Molecular Function	80%
Blast2go	peroxisome	GO:0005777	Cellular Component	80%
Blast2go	mitochondrion	GO:0005739	Cellular Component	80%
Blast2go	plastid	GO:0009536	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	C %	G %	T %	Probability
621	33	66		0.997452
623		66	33	0.997452
624		66	33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain