SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6129

Length: 556 nt

UniGene Fasta

>biog3_v1.0_unigene6129
GATGGAATTTCTTTGATTCATCATGCTTTCAACAGAGGCATCACTTTTTTTACACTGCAGATATGTATGGGCCTTTCACAAATGAAGTCCTAGTTGGCAAGGCTTTGAAAGGTTTGCCCCGTGAGAAAGTTCAGCTGGCCACTAAGTTTGGCAATGTTGTAATAGAAGGTGTTTTTCATGTTAAAGGCTCAGCAGAGTATGTACGCAAAGCTTGTGAAGACAGCCTGAAGCGCCTTGATGTGGATTATATTGATCTTTACTACCAACACCGTGTGGATACTACAGTTCCAATAGAAGAAACTGTGGGAGAACTCAAGAGGCTTGTGCAAGAAGGAAAAGTCAAATATATTGGGCTCTCTGAAGCTAGTGTGGACACCATTAGACGAGCTAATGCTGTACATCCCATTACAGCTGTTCAATTAGAATGGTCTTTGTGGACCCGTGATGTGGAGGATGATATCATTCCTACTTGCAGGGATTTGGGAATAGGCATTGTACCTTATAGTCCTCTTGGACGTGGATTTTTTGCTGGAAAAGCAATTGTTGAAAACACATT

Ace file of the UniGene biog3_v1.0_unigene6129

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9295	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	perakine reductase [Rauvolfia serpentina]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	aldo keto	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Pyridoxine 4-dehydrogenase.	EC:1.1.1.65	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Vitamin B6 metabolism	00750		0.0	81%
Blast2go	Metabolic pathways	01100		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	81%
Blast2go	DNA binding	GO:0003677	Molecular Function	81%
Blast2go	pyridoxine:NADP 4-dehydrogenase activity	GO:0050236	Molecular Function	81%
Blast2go	nucleus	GO:0005634	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Aldo/keto reductase	IPR001395	-	-
Sma3	tRNA/rRNA methyltransferase, SpoU	IPR001537	-	-
Sma3	RNA methyltransferase TrmH family	IPR004441	-	-
Sma3	Glutathione-dependent formaldehyde-activating enzyme/centromere protein V	IPR006913	-	-
Sma3	RNA 2-O ribose methyltransferase, substrate binding	IPR013123	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNQ6

Fln msg: Distance to subject end: 114 aas, your sequence is shorter than subject: 184 - 339

Fln protein: WNFFDSSCFQQRHHFFYTADMYGPFTNEVLVGKALKGLPREKVQLATKFGNVVIEGVFHVKGSAEYVRKACEDSLKRLDVDYIDLYYQHRVDTTVPIEETVGELKRLVQEGKVKYIGLSEASVDTIRRANAVHPITAVQLEWSLWTRDVEDDIIPTCRDLGIGIVPYSPLGRGFFAGKAIVENT

Protein Length: 185

Fln nts: GATGGAATTTCTTTGATTCATCATGCTTTCAACAGAGGCATCACTTTTTTTACACTGCAGATATGTATGGGCCTTTCACAAATGAAGTCCTAGTTGGCAAGGCTTTGAAAGGTTTGCCCCGTGAGAAAGTTCAGCTGGCCACTAAGTTTGGCAATGTTGTAATAGAAGGTGTTTTTCATGTTAAAGGCTCAGCAGAGTATGTACGCAAAGCTTGTGAAGACAGCCTGAAGCGCCTTGATGTGGATTATATTGATCTTTACTACCAACACCGTGTGGATACTACAGTTCCAATAGAAGAAACTGTGGGAGAACTCAAGAGGCTTGTGCAAGAAGGAAAAGTCAAATATATTGGGCTCTCTGAAGCTAGTGTGGACACCATTAGACGAGCTAATGCTGTACATCCCATTACAGCTGTTCAATTAGAATGGTCTTTGTGGACCCGTGATGTGGAGGATGATATCATTCCTACTTGCAGGGATTTGGGAATAGGCATTGTACCTTATAGTCCTCTTGGACGTGGATTTTTTGCTGGAAAAGCAATTGTTGAAAACACATT

Fln Alignment:

Contig6129___FQQRHHFFYTADMYGPFTNEVLVGKALKGLPREKVQLATKFGNVVIEGVFHVKGSAEYVRKACEDSLKRLDVDYIDLYYQHRVDTTVPIEETVGELKRLVQEGKVKYIGLSEASVDTIRRANAVHPITAVQLEWSLWTRDVEDDIIPTCRDLGIGIVPYSPLGRGFFAGKAIVEN
A9NNQ6_________________FEKGITFFDTADVYGSTKNEVLVGKALKQLPRENVQLATKFGIVMIDGKMDAKGTPEYVRKCCEASLKRLDVEYIDLYYQHRVDTTVPIEETIGELKKLVEEGKIKYIGLSEASVDTIRRAHAVHPITAVQLEWSLWTRDIEESIVPVCRELGIGIVPYSPLGRGFFSGKAVVES

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
243	25			75	0.996473
246	25		75		0.996473
247		25	50		0.995533
355	14		85		0.993533
356		14	85		0.993533
357	14		85		0.993533
358		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain