SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6117

Length: 2014 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene6117
AATGTATGTTAGAAACCAACTTCCTGAGCCCAAGCAACAGGGCAATAGAAGTGCAGATGCCGGACAATCTTCAGCTGTTCCGGGTAATGTTCTAATAATGGCAACAATGCTTTGGCTGAAACGCCTGTTGCAATGGATACATCTGACGATGTCCAAATGACAGATGGTGCTACTGTTCCCAATGGAGCTGATAATGAATTGGATGCAACAGAAGTCGTTTATGCAGAAAGACTAGCAAAGATTAAAGGAATTTTGTCTGGTGAAACGGCGATACATCTGATATTGCAGTTTTTGACAGTCACAACAGGTCAGATCTCCTCATTCTGAAAACCATAAAACAGTCTGTTGAAATGCGCAATAGTGTATGCCACAGTGCAACCATTTATGCCAATGCTTTGATGCATGCTGGAACAACTGCAGACACTTTCCTCAGGGAGAATCTGGAATGGCTGAGCAGAGCCACAAACTGGGCAAAATTCAGTGCTACGGCTGGCTTGGGAGTCATTCATAGGGGTCATCTTCAACAAGGCCGTTCTTTGATGGCTCCTTATCTTCCTCAGAATGGTACTAGTGGTGGTGGAAGCCCCTTTTCTGAGGGTGGAGCGCTATATGCCTTGGGACTTATACATGCAAACCACGGAGAAGGGATTAAGGAGTTTCTTCGTGAAAGCTTGCGCAGTGCAAATGTTGAAGTAATTCAACATGGTGCATGTTTGGGTTTGGGTTTGGCTGCTTTGGGAACTGCTGATGAAGAGATTTATGAGGATGTCAAGAATGTTCTTTACTTAGATAGTGCAGTTGCTGGAGAGGCTGCAGGCATAAGTATGGGATTGCTTATGGTTGGAACTGCAAGTGAAAAGGCCAGTGAGATGCTTGCATATGCACATGATACCCAACATGAAAAGATTATCAGAGGTCTGGCCCTTGGAATCGCACTAACTGTCTATGGAAGAGAAGAAGAGGCTGATACACTTATAGAGCAAATGACTCGTGATCAGGATCCAATTCTACGCTATGGTGGGATGTATGCTCTGGCCCTCGCATACAGAGGCACATCCAATAACAAAGCCATTCGTCGTCTGTTGCACTTTGCTGTTTCCGATGTTAGTGATGATGTGAGAAGAACTGCGGTGCTGGCACTTGGATTTGTTTTATACTCTGAACCTGAGCAGACCCCACGAATAGTTTCTTTGTTGTCCGAGTCATATAATCCACATGTCAGATATGGAGCAGCCTTGGCAGTGGGTATCTCTTGTGCAGGCACAGCATTAAGTGAGGCCATTTCACTGCTGGAACCATTAACATCAGATGTGGTAGATTTTGTTCGTCAAGGTGCTCTTATAGCCATGGCTATGGTTCTTGTGCAAACAAATGAGGCACGCGAGCCTCGTGTAGGTAGCTTCAGGCGTCAACTTGAGAAGATCATTCTTGACAAGCATGAAGACACCATGAGCAAGATGGGTGCAATTTTAGCTTCTGGTATTTTAGATGCAGGTGGTCGGAATGTCTCAATTAAGTTGTCATCCAGGACTAAGCATGACAGAATTACTGCTGTTGTTGGTATGGCAGTATTTAGTCAATTTTGGTATTGGTATCCTCTTGTATATTTTCTGAGCCTCTCTTTTGCACCTACTGCTTTGATTGGGCTCAATTATGAACTGAAGGTCCCAAAATTTGAGTTTCTTTCACATGCCAAGCCCTCATTATTTGAGTACCCTCGTCCTACGACACCTCCAACAACAACTTCTGCAGTAAAATTACCAACTGCTGTTTTGTCTACTTCAGCAAAGGCTAAAGCTAGAGCAAAGAAAGAAACAGATCAGAAAACTGCTATGGATGAGGGAAACATTTCTGGTGAAGCAGGACCCATGAAAGGCCCAAAATCTAGTGATAAGGAGGGGGAAGCAATGCAGGTGGATAATGCATCTGAAAAGAAAGCTGAAGCTGAGCGATCTTGTGAAATTCTCTCAAATCCTGCTCGAGTTGTTCCAGCACAGGAAAAGTATATTACATT

Ace file of the UniGene biog3_v1.0_unigene6117 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2642	2/42
SustainPine v2.0	sp_v2.0_unigene8835	7/42
SustainPine v2.0	sp_v2.0_unigene9327	33/42

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome regulatory subunit N2 [Arabidopsis thaliana] gb\|AAC04490.1\| 26S proteasome regulatory subunit (RPN2), putative [Arabidopsis thaliana] gb\|AAM20712.1\| 26S proteasome regulatory subunit [Arabidopsis thaliana] gb\|AEC08730.1\| 26S proteasome regu	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	26s proteasome regulatory subunit n2	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	regulation of protein catabolic process	GO:0042176	Biological Process	83%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	83%
Blast2go	regulation of catalytic activity	GO:0050790	Biological Process	83%
Blast2go	binding	GO:0005488	Molecular Function	83%
Blast2go	enzyme regulator activity	GO:0030234	Molecular Function	83%
Blast2go	proteasome regulatory particle, base subcomplex	GO:0008540	Cellular Component	83%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	83%
Blast2go	plasma membrane	GO:0005886	Cellular Component	83%
Blast2go	nucleus	GO:0005634	Cellular Component	83%
Blast2go	cytosol	GO:0005829	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit	IPR016642	-	-
Sma3	Proteasome/cyclosome, regulatory subunit	IPR002015	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQS7

Fln msg: Separated hits, possible frame ERROR between 73 and 109, and possible frame ERROR between 294 and 297, Distance to subject end: 72 aas, your sequence is shorter than subject: 671 - 773

Fln protein: MYVRNQLPEPKQQGNRSADAGQSxxxxxxxxxxxxxALAETPVAMDTSDDVQMTDGATVPNGADNELDATEVVYAERLAKIKGILSGETAIHLILQFxxSHNRSDLLILKTIKQSVEMRNSVCHSATIYANALMHAGTTADTFLRENLEWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQNGTSGGGSPFSEGGALYALGLIHANHGEGIKEFLRESLRSANVEVIQHGACLGLGLAALGTADEEIYEDVKNVLYLDSAVAGEAAGISMGLLMVGTASEKASEMLAYAHDTQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYRGTSNNKAIRRLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTALSEAISLLEPLTSDVVDFVRQGALIAMAMVLVQTNEAREPRVGSFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVSIKLSSRTKHDRITAVVGMAVFSQFWYWYPLVYFLSLSFAPTALIGLNYELKVPKFEFLSHAKPSLFEYPRPTTPPTTTSAVKLPTAVLSTSAKAKARAKKETDQKTAMDEGNISGEAGPMKGPKSSDKEGEAMQVDNASEKKAEAERSCEILSNPARVVPAQEKYIT

Protein Length: 672

Fln nts: AATGTATGTTAGAAACCAACTTCCTGAGCCCAAGCAACAGGGCAATAGAAGTGCAGATGCCGGACAATCTTCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGCTTTGGCTGAAACGCCTGTTGCAATGGATACATCTGACGATGTCCAAATGACAGATGGTGCTACTGTTCCCAATGGAGCTGATAATGAATTGGATGCAACAGAAGTCGTTTATGCAGAAAGACTAGCAAAGATTAAAGGAATTTTGTCTGGTGAAACGGCGATACATCTGATATTGCAGTTTTxxxACAGTCACAACAGGTCAGATCTCCTCATTCTGAAAACCATAAAACAGTCTGTTGAAATGCGCAATAGTGTATGCCACAGTGCAACCATTTATGCCAATGCTTTGATGCATGCTGGAACAACTGCAGACACTTTCCTCAGGGAGAATCTGGAATGGCTGAGCAGAGCCACAAACTGGGCAAAATTCAGTGCTACGGCTGGCTTGGGAGTCATTCATAGGGGTCATCTTCAACAAGGCCGTTCTTTGATGGCTCCTTATCTTCCTCAGAATGGTACTAGTGGTGGTGGAAGCCCCTTTTCTGAGGGTGGAGCGCTATATGCCTTGGGACTTATACATGCAAACCACGGAGAAGGGATTAAGGAGTTTCTTCGTGAAAGCTTGCGCAGTGCAAATGTTGAAGTAATTCAACATGGTGCATGTTTGGGTTTGGGTTTGGCTGCTTTGGGAACTGCTGATGAAGAGATTTATGAGGATGTCAAGAATGTTCTTTACTTAGATAGTGCAGTTGCTGGAGAGGCTGCAGGCATAAGTATGGGATTGCTTATGGTTGGAACTGCAAGTGAAAAGGCCAGTGAGATGCTTGCATATGCACATGATACCCAACATGAAAAGATTATCAGAGGTCTGGCCCTTGGAATCGCACTAACTGTCTATGGAAGAGAAGAAGAGGCTGATACACTTATAGAGCAAATGACTCGTGATCAGGATCCAATTCTACGCTATGGTGGGATGTATGCTCTGGCCCTCGCATACAGAGGCACATCCAATAACAAAGCCATTCGTCGTCTGTTGCACTTTGCTGTTTCCGATGTTAGTGATGATGTGAGAAGAACTGCGGTGCTGGCACTTGGATTTGTTTTATACTCTGAACCTGAGCAGACCCCACGAATAGTTTCTTTGTTGTCCGAGTCATATAATCCACATGTCAGATATGGAGCAGCCTTGGCAGTGGGTATCTCTTGTGCAGGCACAGCATTAAGTGAGGCCATTTCACTGCTGGAACCATTAACATCAGATGTGGTAGATTTTGTTCGTCAAGGTGCTCTTATAGCCATGGCTATGGTTCTTGTGCAAACAAATGAGGCACGCGAGCCTCGTGTAGGTAGCTTCAGGCGTCAACTTGAGAAGATCATTCTTGACAAGCATGAAGACACCATGAGCAAGATGGGTGCAATTTTAGCTTCTGGTATTTTAGATGCAGGTGGTCGGAATGTCTCAATTAAGTTGTCATCCAGGACTAAGCATGACAGAATTACTGCTGTTGTTGGTATGGCAGTATTTAGTCAATTTTGGTATTGGTATCCTCTTGTATATTTTCTGAGCCTCTCTTTTGCACCTACTGCTTTGATTGGGCTCAATTATGAACTGAAGGTCCCAAAATTTGAGTTTCTTTCACATGCCAAGCCCTCATTATTTGAGTACCCTCGTCCTACGACACCTCCAACAACAACTTCTGCAGTAAAATTACCAACTGCTGTTTTGTCTACTTCAGCAAAGGCTAAAGCTAGAGCAAAGAAAGAAACAGATCAGAAAACTGCTATGGATGAGGGAAACATTTCTGGTGAAGCAGGACCCATGAAAGGCCCAAAATCTAGTGATAAGGAGGGGGAAGCAATGCAGGTGGATAATGCATCTGAAAAGAAAGCTGAAGCTGAGCGATCTTGTGAAATTCTCTCAAATCCTGCTCGAGTTGTTCCAGCACAGGAAAAGTATATTACATT

Fln Alignment:

Contig6117___VRNQLPEPKQQGNRSADAGQSSxxxxxxxxxxxxALAETPVAMDTSDDVQMTDGATVP-----NGADNELDATEVVYAERLAKIKGILSGETAIHLILQFLxSHNRSDLLILKTIKQSVEMRNSVCHSATIYANALMHAGTTADTFLRENLEWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQNGTSGGGSPFSEGGALYALGLIHANHGEGIKEFLRESLRSANVEVIQHXXXXXXXXXXXXXADEEIYEDVKNVLYLDSAVAGEAAGISMGLLMVGTASEKASEMLAYAHDTQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYRGTSNNKAIRRLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTALSEAISLLEPLTSDVVDFVRQGALIAMAMVLVQTNEAREPRVGSFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVSIKLSSRTKHDRITAVVGMAVFSQFWYWYPLVYFLSLSFAPTALIGLNYELKVPKFEFLSHAKPSLFEYPRXXXXXXXTSAVKLPTAVLSTSXXXXXXXXKETDQKTAMDEGNISGEAGPMKGPKSSDKEGEAMQVDNASEKKAEAERSCEILSNPARVVPAQEKYI
B8LQS7_________________VRDRLPESKTQLSNNPSSSQSSxxxxxxxxxxxxASPDTSAAMDTSEDVHMVDESMMETVHTRNGTTNLTDTKEAAYTERLAKLKIILSGETPIQLTLQFLxSHNRADLLILKTIKQSVEMRNSVCHSATIYANALMHAGTTVDTFLRENLEWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQHGSSGGGSPYSEGGALYALGLIHANHGEGIKEFLRESLRSTNVEIIQHGACLGLGLAALGTADEEIYEDVKNVLYTDNAVAGEAAGISMGLLMVGTASEKASEMLAYAHDTQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYRGTSNNKAIRRLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTALSEAISLLEPLTSDVVDFVRQGALIAMAMVLVQTNEAREPRVGSFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVSIKLSSRTKHDRITAVVGMAVFSQFWYWYPLVYFLSLSFAPTALIGLNYELKVPKFEFLSHAKPSLFEYPRPTTPPTTTSAVKLPTAVLSTSAKAKARAKKETDQKTAMDEGNISGEAGPIKGSKSSDKEGEAIQLDNASEKKAEAEPSCEILSNPARVVPAQEKYI

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
984	20		80		0.995493
985	80			20	0.995493
1139	33		66		1.0
1142	66			33	1.0
1143			66	33	1.0
1194	16			83	0.994512
1195		16		83	0.994512
1198			83	16	0.994512
1268	33			66	0.997452
1271			66	33	0.997452
1272		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1286	1303	CCAAAC CCAAAC CCAAAC	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain