SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6109

Length: 1040 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6109

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17806	33/33

Source	Descriptions	Term	Type	Identity
AutoFact	WD repeat-containing protein 61 [Arabidopsis thaliana] emb\|CAB43658.1\| putative protein [Arabidopsis thaliana] emb\|CAB79741.1\| putative protein [Arabidopsis thaliana] gb\|AAP37692.1\| At4g29830 [Arabidopsis thaliana] gb\|AEE85683.1\| WD repeat-containing prot	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	80%
Blast2go	histone H3-K4 methylation	GO:0051568	Biological Process	80%
Blast2go	histone H3-K36 methylation	GO:0010452	Biological Process	80%
Blast2go	protein binding	GO:0005515	Molecular Function	80%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX55

Fln msg: your sequence is shorter than subject: 260 - 322

Fln protein: NVVAAHPTIPIAASTSLDSFVRVFDVDSNNTVSTLESPPSEAWNMRFHPKGDMLAVAGGGSASVKLWDTTSWRTDVSLEVPKGEGTNTKSSEKAGGKFVLAVAWSRDGSRLACSTMDGTIAIFDVMRGKFLYNLEGHYMPVRSLAFSPTDSRILFSASDDKHIHMYDVDNKSLICAMSGHTSWVLSIDVSPDGLAVATGSSDRTVRLWDLSMRASVQTMTNHTDQVWGVAFRPTGSSGSRSGRLASVSDDKSISLYDFT*

Protein Length: 261

Fln nts: AATGTAGTGGCCGCCCATCCTACGATACCAATTGCCGCTTCCACCTCCCTCGACAGCTTCGTCCGCGTCTTCGATGTCGACAGCAACAACACTGTTTCTACGCTGGAGTCGCCCCCTTCAGAAGCCTGGAACATGCGGTTCCATCCCAAGGGGGATATGTTGGCTGTAGCTGGAGGGGGTAGTGCCTCTGTGAAGCTGTGGGATACTACTTCATGGCGGACAGATGTTTCCCTTGAAGTTCCTAAAGGAGAGGGTACTAACACAAAATCATCAGAAAAAGCTGGAGGGAAATTTGTTCTAGCTGTTGCATGGAGTCGAGATGGAAGTCGTCTTGCATGCAGCACAATGGACGGGACAATAGCAATATTTGATGTGATGCGTGGCAAATTCCTGTACAATTTGGAGGGTCATTACATGCCAGTGAGATCCCTCGCTTTTTCTCCCACTGATTCTCGGATCTTATTCTCTGCTTCAGATGACAAGCATATTCATATGTATGATGTTGACAACAAGAGCCTTATCTGTGCTATGTCTGGGCATACAAGTTGGGTTCTGAGTATCGATGTCAGCCCAGATGGTTTAGCTGTTGCCACAGGATCCAGTGATAGAACAGTTAGGCTTTGGGACCTCTCTATGAGGGCATCTGTCCAAACAATGACCAATCATACTGATCAAGTATGGGGTGTGGCATTTCGTCCAACTGGGTCTTCCGGTTCTAGATCAGGCAGGCTTGCAAGTGTTTCTGATGATAAAAGCATATCATTGTATGACTTTACCTGA___GATTTGGGTTAGTCTGCTTTCAGGGATTTTGTGTGATCTCAATGGCATTCTTTAGCACGTGTGAGATTTGTGCTTTCTGTCAAATTTACATAGTAGTTCTAATCCCCACTCTGAGGAGAATGGTTGATTGGTAAATTATTGTTTTGTGGAGTGAAGTCACAACCAACCTTTCCTAGGCTGTTTGAGTATCCAGAGTTTTATGCCAATCAAAATCAGATGCGATTCTTTGAAGGAGATAAAACTATAATTTTACCCACATT

Fln Alignment:

Contig6109___VAAHPTIPIAASTSLDSFVRVFDVDSNNTVSTLESPPSEAWNMRFHPKGDMLAVAGGGSASVKLWDTTSWRTDVSLEVPKGEGTNTKSSEKAGGKFVLAVAWSRDGSRLACSTMDGTIAIFDVMRGKFLYNLEGHYMPVRSLAFSPTDSRILFSASDDKHIHMYDVDNKSLICAMSGHTSWVLSIDVSPDGLAVATGSSDRTVRLWDLSMRASVQTMTNHTDQVWGVAFRPTXXXXXXXXXLASVSDDKSISLYDFT
A9NX55_________________VAAHPTVAIAASTSLDSFVRVFDVDTNVTVSTLESPPSEAWNMRFHPKGDMLAVAGGGSATVKLWDTTSWRTDVSLEVPKGEGTNTKSSEKAGGKFVLAVAWSRDGSRLACSTMDGTIAIFDVPRAKFLYNLEGHYMPVRSLVFSPTDSRILFSASDDKHIHMYDVDNKSLICAMSGHASWVLSIDVSPDGLAVATGSSDRTVRLWDLSMRSSVQTMTNHTDQVWGVAFRPTGSPGSRAGRLASVSDDKSISLYDFT

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
367	87			12	0.992554
405	20		80		0.995493
406		20	80		0.995493
408			60	20	0.99255
409			80	20	0.995493
414	16			83	0.994512
416	83		16		0.994512
417		83		16	0.994512
421	16	83			0.994512
424			83	16	0.994512
450	20	80			0.995493
458	14	85			0.993533
459	14		85		0.993533
460			85	14	0.993533
461	85		14		0.993533
689	10		90		0.90298
690	10			90	0.90298
691			90	10	0.90298
693		90		10	0.90298
744		28	71		1.0
745	28			71	1.0
751		20	80		0.995493
754			80	20	0.995493
773		33		66	0.997452
880	80			20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain