SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6102

Length: 1843 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6102

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene863	32/38
SustainPine v2.0	sp_v2.0_unigene27431	6/38

Source	Descriptions	Term	Type	Identity
AutoFact	armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] dbj\|BAB09724.1\| importin beta [Arabidopsis thaliana] gb\|AED96362.1\| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	protein	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	intracellular protein transport	GO:0006886	Biological Process	87%
Blast2go	binding	GO:0005488	Molecular Function	87%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	87%

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Importin-beta, N-terminal	IPR001494	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQV8

Fln msg: your sequence is shorter than subject: 352 - 874

Fln protein: CLRTAAYETLNEVVRCSTKDTAAIVMQLVPVIMLKLNETLEMQKLSSEGKEKQSDLQALLCGCLQVIIQKLSASESTKYGILQYADQMMNLFLRVFACRSATVHEEAMLAIGALAYATGVEFRKYMQEFYRYLEMGLQNFEEYQVCAITVGVVGDICRALDDNVLPFCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGPQFEKYLIYAMPMLQSAAELSVQSAGADDEMIEYSNQLRNGILEAYSGIFQGFKNSQKAELLMPYAGHILQFLESIYQDKDMDEQVTKAAVGVLGDLADTLGSNSAPLLRQYAFYNDFIDECLSSDDQLIKETAEWVQMTVTRVLSS*

Protein Length: 353

Fln nts: AATGTCTGCGGACTGCAGCATACGAGACATTGAATGAGGTTGTTCGTTGTTCAACTAAAGACACAGCTGCTATTGTTATGCAACTTGTTCCTGTCATCATGCTTAAGCTTAATGAAACTTTGGAGATGCAGAAACTATCATCAGAAGGCAAAGAAAAACAGAGTGATTTGCAAGCACTTCTATGTGGTTGCTTGCAAGTGATCATTCAAAAATTGAGTGCTTCGGAGTCAACTAAGTATGGTATTCTACAATATGCTGATCAAATGATGAATCTTTTCTTGAGGGTATTTGCCTGTCGGAGTGCCACTGTTCATGAGGAAGCAATGTTGGCAATAGGAGCTCTGGCATATGCAACAGGTGTGGAATTTAGAAAATACATGCAAGAATTCTACCGATATTTAGAGATGGGTCTCCAAAACTTTGAAGAATACCAGGTCTGTGCTATTACTGTTGGTGTGGTCGGTGATATATGCAGGGCACTGGATGACAATGTTCTGCCTTTCTGTGATGGAATCATGACCCAGCTTCTTAAAGATCTGTCGAGCAATCAGTTGCACCGATCTGTTAAGCCTCCAATATTCTCATGCTTTGGAGATATTGCGTTGGCTATTGGACCCCAATTTGAGAAATACTTAATATATGCAATGCCTATGCTTCAGAGTGCAGCAGAGCTATCGGTGCAATCTGCAGGTGCTGATGATGAAATGATTGAATACAGTAATCAGCTACGTAATGGAATTCTAGAAGCTTACTCAGGGATTTTCCAAGGTTTCAAAAATTCACAGAAGGCTGAGTTGCTGATGCCTTATGCAGGTCACATTTTGCAATTCCTCGAGAGTATTTATCAAGACAAAGACATGGATGAGCAAGTAACAAAGGCTGCAGTTGGGGTCCTAGGTGACTTGGCTGATACATTGGGTTCAAATTCTGCACCGTTGCTGCGACAGTATGCCTTTTACAATGATTTTATTGATGAGTGCTTGTCATCTGATGATCAACTGATTAAGGAGACTGCAGAATGGGTTCAGATGACTGTAACCCGAGTTCTTTCGAGTTGA___TTGTGCCCAGAAAGTTTGGAAATGCATGCAGTTGTTTGGGTGCGTCGAGTTAAAGGAGTTTGGGATTGCATACTTATCATTGTGTCAATGATGATTCCAGAATCCACATGAAGCTTGCCAACATATTTACAGGTCCTCAGGGATTTTAAGGTACCACCTTGAGAGTCAGGGTTTTGGTTGAGAGGATCTGGGAATTTGATTCCTGCCTCTGCTAACTTTTCATCTCTTCCATTGCTTGGCAGCAAGATTTTGAAAGTCTTGCCCAAGTCCTGCTTGTTAGTGGGCCTCAAAGAGAGCTTAAACTGCTTTCATGGTTATGAAAGCAGCTCTCAGAGCTGTTGTTCTATCAACAGCTAAAACATCATCTTTGGTTGCTTTTGTTGTGCTTACAAAAGCATCAAAGGTTGGTTTGAAATAAGACAATGGCAATGTCAAGATTGCATAACAAGAAAAAATTACCATTGCTTCTGCCACTTTGTATGCCAACCATGCCATACCTTGCTACGTGCCAAACTGGCCAGATTGATTAATAGCCCTTCTTCTATTACATCTGAAAGAAAGCACATTTGCTTTCTTAGGCTCAATGCTGATGCATTAGCCAAGTTCATCAAATATTAGCATCTGCTTTTCCACCTTCTTATCTTCCATGTTTTCCTCCTTATTAATTGGATAGGTTAAATATCCTTAAATCCATTGCATTTATGTTTAGGACTGCTTCAAAGCAAGCATGCATATGCAGAATAAATTTCTGCAATGCATTACTAATTTGAGTTGAACCATTCTTT

Fln Alignment:

Contig6102___LRTAAYETLNEVVRCSTKDTAAIVMQLVPVIMLKLNETLEMQKLSSEGKEKQSDLQALLCGCLQVIIQKLSASESTKYGILQYADQMMNLFLRVFACRSATVHEEAMLAIGALAYATGVEFRKYMQEFYRYLEMGLQNFEEYQVCAITVGVVGDICRALDDNVLPFCDGIMTQLLKDLSSNQLHRSVKPPIFSCFGDIALAIGPQFEKYLIYAMPMLQSAAELSVQSAGADDEMIEYSNQLRNGILEAYSGIFQGFKNSQKAELLMPYAGHILQFLESIYQDKDMDEQVTKAAVGVLGDLADTLGSNSAPLLRQYAFYNDFIDECLSSDDQLIKETAEWVQMTVTRVLSS
C0PQV8_________________IRTAAYETLNEIVRCSTQETASVIMQLLPLIMTKLGQTMELQIVSSDDREKQGDLQALLCGVLQVIIQKLGNQETTKYAILQYADQMMALFLQVFACRSATVHEEAMLAIGALAYATGAEFAKYMPEFYKYVEMGLQNFEEYQVCAVTVGVVGDICRALEAKIFPFCDGIMTHLLKDLSSSQLHRSVKPPIFSCFGDIALAIDGNFEKYLAYAMPMLQSAAEIAAQSVSTDDEMVEYNNQLRNGIFEAYSGILQGFKNA-KPELMMPYVVHILQFIEAVFRDKERDDSVTKSAAGVLGDLADTLGNNAAPVFRNSAFFNEFLGECMASEDNQVKETASWAQSTIQLVLQS

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1699	25			75	0.996473
1700		25		75	0.996473
1701	25	75			0.996473
1710	25	75			0.996473
1813	33			66	0.997452
1817			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain