SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6078

Length: 1423 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6078

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18055	23/23

Source	Descriptions	Term	Type	Identity
AutoFact	chloroplast processing peptidase [Arabidopsis thaliana] sp\|Q8H0W1.2\|PLSP1_ARATH RecName: Full=Chloroplast processing peptidase; AltName: Full=Signal peptidase I-3; Flags: Precursor gb\|AAU05529.1\| At1g05140 [Arabidopsis thaliana] gb\|AEE76927.1\| chloroplast	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	thylakoid membrane organization	GO:0010027	Biological Process	76%
Blast2go	protein maturation	GO:0051604	Biological Process	76%
Blast2go	peptidase activity	GO:0008233	Molecular Function	76%
Blast2go	plastid envelope	GO:0009526	Cellular Component	76%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S26A, signal peptidase I	IPR000223	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-
Sma3	Peptidase S24/S26A/S26B/S26C, beta-ribbon domain	IPR011056	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNH9

Fln msg: your sequence is shorter than subject: 296 - 400

Fln protein: SMGGASMFRLKSSTIIPFFQGLKWFPCSEIFQGLAVAKPGRMDNFVNSSSLSNDDPVDGGGEDNALLEKKTEKRSETVEQKSSSERLSWLPGWAQISSDDAKTLAAAVAISLIFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKLSYYFRKPDVTDIVIFKAPPTLQAKGYSAGDVFVKRVVAKSGDCVAVHNGKLLVNGVVQDEDFILEPPAYEMDPVCVPKGYVFVMGDNRNNSFDSHVWGPLPVKNILGRSVLRYWPPTRLGSTVHETTLGSTVHGTGTTILPDCRVAANVAK*

Protein Length: 297

Fln nts: CTTCGATGGGGGGAGCTTCCATGTTCAGGCTTAAGTCATCCACCATCATACCCTTTTTCCAGGGCTTGAAATGGTTTCCTTGCAGTGAAATCTTTCAGGGCTTGGCTGTTGCCAAGCCCGGAAGGATGGATAACTTTGTAAATTCTTCTAGTTTGAGCAACGACGATCCAGTGGACGGAGGAGGAGAAGACAATGCCCTACTGGAAAAGAAAACAGAGAAGCGGTCGGAAACTGTTGAACAGAAGAGTAGCAGTGAGAGATTGAGTTGGCTGCCTGGGTGGGCTCAGATAAGCTCAGATGATGCAAAGACCCTTGCAGCTGCGGTTGCCATATCCCTGATTTTCAGGTCGTTTGTGGCAGAACCCAGATACATTCCTTCCCTCTCCATGTATCCAACCTTCGATGTTGGAGATCGAATCGTCGCGGAAAAGCTCTCCTATTATTTTAGAAAGCCAGATGTGACTGATATAGTAATATTCAAGGCTCCCCCAACTTTACAGGCAAAAGGATACAGTGCAGGAGATGTATTCGTTAAAAGAGTAGTAGCAAAATCAGGCGATTGTGTGGCAGTTCACAATGGCAAGTTACTGGTGAATGGGGTTGTCCAAGATGAAGATTTCATTCTTGAGCCACCTGCATATGAGATGGATCCAGTGTGCGTTCCAAAAGGCTATGTCTTTGTGATGGGTGATAATCGCAACAACAGTTTTGACTCCCATGTTTGGGGCCCACTTCCTGTCAAGAACATTTTAGGGAGATCTGTACTCCGCTACTGGCCTCCAACTAGACTTGGAAGTACTGTTCATGAAACTACGCTTGGAAGTACTGTTCATGGAACAGGAACAACCATATTACCAGACTGCAGAGTAGCAGCTAATGTTGCCAAGTAA___GACATTTTTTGGAGAGTTGCTTTTGCTCAAGTCCCTCTTGAACATTCTTAATTCAAAGGGAAAGCATTGAATGATTTTAAAGCCATAAGTTTTGGCGATCCCAGAGATTCACAACAGAGTTATTGTGATGCCATTTAAGAGCCAGATTCTCATTTCTGGTGGACTTCATTCGGTGAGAAGATGTGACGAGTAAGAAGTTGAAAATGGATGATCTGTGTCTCCTCTGCAGTATGATTGAATTGAAAATAAATTTCTGTGTATGGTGCTTATCATTGCCCCATTTATAATAATCATACTACTGAATTGAAATAAATCTCAGCATATGCTGCATATCATTGCCCCATTTGTAATAGAGCACTAAACTGGGCATTCCTAATTTATATGGTTGGCATTGGCCAAAAGTAGTATTAAGGTAGAGACTGAACAAATTTTATGGTCATGGATGGTCAAAGCCAGACAATGTTATTAGTTTTATTGATTATTGGACTGGGTTATAAGGTGAAGGATCCTGAACTTTTACTGGTAAAAACATT

Fln Alignment:

Contig6078___SMGGASMFRLKSSTIIPFFQGLKWFPCSEIFQGLAVAKPGRMDNFVNSS-SLSNDDPVDGGGEDNALLEKKTEKRSETVEQKSSSERLSWLPGWAQISSDDAKTLAAAVAISLIFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKLSYYFRKPDVTDIVIFKAPPTLQAKGYSAGDVFVKRVVAKSGDCVAVHNGKLLVNGVVQDEDFILEPPAYEMDPVCVPKGYVFVMGDNRNNSFDSHVWGPLPVKNILGRSVLRYWPPTRLGSTVHETTLGSTVHGTGTTILPDCRVAA
B8LNH9_________________SMGGASMFRLKSSTMIPFFQGLKWLPCHEFFQGLLLVKPGRRDNCVSSSCSLSNDDQGGGVEEDNALLEKETEKRPETVQQKSGSERLSWLPEWAHISSDDAKTLAAAVAISLIFRSFVAEPRFIPSLSMYPTFNVGDRIVAEKVSYYFRKPDVTDIVIFKAPPTLQKNGYSAGDVFIKRVVAKSGDCVEVRNGKLLVNGVVQDEDFILEPPKYEMDPVCVPEDYVFVMGDNRNNSFDSHVWGPLPVKNILGRSVLRYWPPTRLGSTVHE---------TGTVISLDRRVAS

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
389			33	66	0.997452
390		66	33		0.997452
391		66	33		0.997452
527		20	80		0.995493
530			80	20	0.995493
532		25		75	0.996473
538	33			66	0.997452
539		33		66	0.997452
541	66			33	0.997452
542	66			33	0.997452
719	25	75			0.996473
720	25			75	0.996473
721		75	25		0.996473
723	25	75			0.996473
724		75		25	0.996473
725	75			25	0.996473
774	33	66			0.997452
776	33		66		0.997452
777		66		33	0.997452
855		83		16	0.994512
856		83	16		0.994512
914		16	83		0.994512
979	85			14	0.993533
981		83		16	0.994512
992	20		80		0.995493
995	20		80		0.995493
996	80			20	0.995493
1119	25	75			0.996473
1121	25			75	0.996473
1122		75		25	0.996473
1206	75	25			0.996473
1209	75			25	0.996473
1252	66			33	0.997452
1334	33		66		0.997452
1340			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain