SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6074

Length: 1108 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6074

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2554	26/32
SustainPine v2.0	sp_v2.0_unigene17402	6/32

Source	Descriptions	Term	Type	Identity
AutoFact	pyrimidine 2 [Arabidopsis thaliana] gb\|AAO33381.1\|AF465755_1 dihydropyrimidine amidohydrolase [Arabidopsis thaliana] dbj\|BAB10038.1\| dihydropyrimidinase [Arabidopsis thaliana] gb\|AED91773.1\| pyrimidine 2 [Arabidopsis thaliana]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	dihydropyrimidinase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Dihydropyrimidinase.	EC:3.5.2.2	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Pyrimidine metabolism	00240	87%
Blast2go	beta-Alanine metabolism	00410	87%
Blast2go	Pantothenate and CoA biosynthesis	00770	87%
Blast2go	Drug metabolism - other enzymes	00983	87%
Blast2go	Metabolic pathways	01100	87%

Source	GOs	Term	Type	Identity
Blast2go	uracil catabolic process	GO:0006212	Biological Process	87%
Blast2go	cellular response to nitrogen levels	GO:0043562	Biological Process	87%
Blast2go	dihydropyrimidinase activity	GO:0004157	Molecular Function	87%
Blast2go	endomembrane system	GO:0012505	Cellular Component	87%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Amidohydrolase 1	IPR006680	-	0.0	-
Sma3	Hydantoinase/dihydropyrimidinase	IPR011778	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV41

Fln msg: your sequence is shorter than subject: 327 - 533

Fln protein: NVEVLLKGFNMCKDLGALAQVHAENGDAVAEGQSQMIKLGITGPEGHALSRPSMLEGEATARAIRLAKFVNTPLYVVHVMSIDALDEIVRARKSGQRVIGEPVVSGLVLDDSKLWDPDFRIAAQYVMSPPIRSSGHNQALQAALSTGLLQLVGTDHCSFNSTQKEAGLNDFRKIPNGVNGIEERMHLIWDIMVNSGQISVMDYVRITSTACAQIFNIYPRKGAILPNSDADIIILNPNATFQINAKSHHSKMDTNVYEGWVGKGKVEVTISRGKVVWEHDRLMIEEGSGQYIPMPPFGYLFDGIDKIDSTYLSSLKAPVYRVVSEI*

Protein Length: 328

Fln nts: AATGTTGAAGTACTCCTGAAAGGCTTCAATATGTGCAAGGATTTAGGCGCCTTAGCTCAAGTTCATGCTGAGAATGGGGATGCAGTAGCAGAAGGACAATCTCAAATGATTAAACTGGGTATAACTGGCCCAGAGGGTCATGCACTTTCCAGGCCTTCAATGCTAGAAGGTGAGGCAACTGCTAGAGCCATCCGGTTAGCAAAGTTTGTCAACACACCCCTGTATGTTGTCCATGTGATGAGCATTGATGCCCTTGATGAAATTGTTAGGGCTCGTAAATCTGGTCAAAGGGTAATAGGAGAGCCAGTAGTTTCTGGTTTAGTCCTTGATGATTCTAAGCTTTGGGATCCTGACTTCAGGATTGCTGCCCAATACGTGATGAGCCCACCAATAAGGTCATCTGGACACAACCAAGCACTTCAGGCTGCTCTTTCAACAGGGCTTTTACAGTTGGTAGGAACAGATCACTGCTCATTCAACTCAACACAAAAAGAAGCTGGGTTAAATGATTTTCGAAAAATTCCAAACGGTGTAAATGGAATTGAAGAAAGGATGCACTTAATTTGGGATATAATGGTGAACTCTGGTCAAATATCAGTCATGGATTATGTTCGTATCACCAGCACAGCATGTGCACAAATATTCAATATATATCCAAGAAAAGGGGCGATTCTTCCCAACTCGGATGCAGACATAATCATACTGAATCCGAATGCAACGTTTCAAATAAATGCCAAGTCTCATCACTCAAAGATGGACACAAATGTCTATGAAGGTTGGGTAGGAAAGGGAAAAGTTGAAGTTACGATTTCAAGAGGTAAAGTTGTATGGGAACATGACAGATTGATGATTGAGGAAGGATCAGGGCAATACATACCCATGCCTCCTTTTGGCTATCTTTTTGATGGCATTGACAAAATTGATTCAACCTACTTGTCTTCTTTAAAAGCTCCAGTTTATCGAGTGGTATCTGAAATCTAA___GTCACTTGTTTCATGTTCACGTTCAAATTTGAAAAACAAATGACATTCGAAAAATGTTTGTCGGAACAAATTTAATATGATAAGCCACTAAGTTCAATAAAGATAAGACAGTTCTATTATAGACATT

Fln Alignment:

Contig6074___NVEVLLKGFNMCKDLGALAQVHAENGDAVAEGQSQMIKLGITGPEGHALSRPSMLEGEATARAIRLAKFVNTPLYVVHVMSIDALDEIVRARKSGQRVIGEPVVSGLVLDDSKLWDPDFRIAAQYVMSPPIRSSGHNQALQAALSTGLLQLVGTDHCSFNSTQKEAGLNDFRKIPNGVNGIEERMHLIWDIMVNSGQISVMDYVRITSTACAQIFNIYPRKGAILPNSDADIIILNPNATFQINAKSHHSKMDTNVYEGWVGKGKVEVTISRGKVVWEHDRLMIEEGSGQYIPMPPFGYLFDGIDKIDSTYLSSLKAPVYR
A9NV41_________________NDEVLLKGFKMCKDLGALAQVHAENGDAVAEGQSRMIKLGITGPEGHALSRPSMLEGEATARAIRLAKFVNTPLYVVHVMSIDALDEIVRARKSGQRVIGEPVVSGLVLDDSKLWDPDFMIAAQYVMSPPIRSSGHNQALRAALSTGLLQLVGTDHCSFNSTQKEAGLNDFRKIPNGVNGIEERMHLIWDVMVNSGQISVMDYVRITSTACAQIFNIYPRKGAILPNSDADIIILNPNATFQITAKSHHSKMDTNVYEGWAGKGKVEVTISRGKIVWEHDRLMIQRGSGQYISMPPFGYLFDGIDKIDSTYLSSLKAPVYR

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
811	37		62		1.0
897	16		83		0.994512
910			16	66	0.988813
924		20		80	0.995493
1093	33			66	0.997452
1094		33		66	0.997452
1095	33		66		0.997452
1096			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain