SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6069

Length: 616 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6069

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2940	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	ketopantoate hydroxymethyltransferase 1 [Arabidopsis thaliana] gb\|AAC62893.1\| 3-methyl-2-oxobutanoate hydroxy-methyl-transferase [Arabidopsis thaliana] gb\|AAO44086.1\| At2g46110 [Arabidopsis thaliana] dbj\|BAE99826.1\| 3-methyl-2-oxobutanoate hydroxy-methyl-	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	3-methyl-2-oxobutanoate hydroxymethyltransferase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	3-methyl-2-oxobutanoate hydroxymethyltransferase.	EC:2.1.2.11	-	0.0	82%

Source	KEGGs	Term	Type	Identity
Blast2go	Pantothenate and CoA biosynthesis	00770		82%
Blast2go	Metabolic pathways	01100		82%
Blast2go	Biosynthesis of secondary metabolites	01110		82%
Blast2go	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	82%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	82%
Blast2go	Tetracycline biosynthesis	00253	82%
Blast2go	Histidine metabolism	00340	82%
Blast2go	Tyrosine metabolism	00350	82%
Blast2go	Phenylalanine metabolism	00360	82%
Blast2go	Tryptophan metabolism	00380	82%
Blast2go	Benzoxazinoid biosynthesis	00402	82%
Blast2go	Selenocompound metabolism	00450	82%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	82%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	82%
Blast2go	Methane metabolism	00680	82%
Blast2go	Porphyrin and chlorophyll metabolism	00860	82%
Blast2go	Carotenoid biosynthesis	00906	82%
Blast2go	Phenylpropanoid biosynthesis	00940	82%
Blast2go	Flavonoid biosynthesis	00941	82%
Blast2go	Anthocyanin biosynthesis	00942	82%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	82%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	82%
Blast2go	Insect hormone biosynthesis	00981	82%
Blast2go	Biosynthesis of type II polyketide products	01057	82%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	82%
Blast2go	Metabolic pathways	01100	82%
Blast2go	Biosynthesis of secondary metabolites	01110	82%

Source	GOs	Term	Type	Identity
Blast2go	pantothenate biosynthetic process	GO:0015940	Biological Process	82%
Blast2go	methylation	GO:0032259	Biological Process	82%
Blast2go	3-methyl-2-oxobutanoate hydroxymethyltransferase activity	GO:0003864	Molecular Function	82%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	82%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	82%
Blast2go	methyltransferase activity	GO:0008168	Molecular Function	82%
Blast2go	mitochondrion	GO:0005739	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ketopantoate hydroxymethyltransferase	IPR003700	-	0.0	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
353			85	14	0.993533
394	14		85		0.993533
477	16			83	0.994512
485	16			83	0.994512
486		16		83	0.994512
487	16	83			0.994512
489	33		50	16	1.0
490	60	40			1.0
492		60		40	1.0
500			66	33	0.997452
582		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain