SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene6066

Length: 1838 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene6066

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene389	46/47

Source	Descriptions	Term	Type	Identity
AutoFact	wound-inducible carboxypeptidase [Solanum lycopersicum]	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	serine carboxypeptidase-like 20-like isoform 1	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine-type carboxypeptidases.	EC:3.4.16.-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	78%
Blast2go	serine-type carboxypeptidase activity	GO:0004185	Molecular Function	78%
Blast2go	extracellular region	GO:0005576	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	0.0	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ79

Fln msg: Distance to subject end: 23 aas, your sequence is shorter than subject: 466 - 494

Fln protein: MDFGKVVWTCFLGLVAFHSYAEAAPADARITSIPGYDGTLPSDHYAGYVKVSKAKNLYYYFVTSEGNAANDPVVLWLNGGPGCSSFDGFVYEHGPFNYEAGKTVGSLPKLYLNKYSWAKVSNIIYLDSPVGVGLSYSENVDDYVTGDLQTASDTHSFLLKWFEEYPEFLSNPFYISGESYAGIYVPTLALEVVKGIESRVTPILNFKGYMVGNGVTDNTFDGNALVPFVHGMGLISDEQYKDAVDACKGNYYDTADTSCDTKIMVIEQEVARLNIYNILEPCYHDPEMQKAVENMEKVPESFKQLGQTDRPSKVRRRMFGRAWPMRAPVKDGNVPTWPKISGVPCTDDRFASVWLNDESVRQAIHAQTKEVAGEWAICTDRINFNHDAGSMIPYHANLTGKGYRAFIYSGDHDMCVPYTGTEAWTRSLGYETRDAWRPWIVDDQVAGYTQGYAYNLTFATIKGAGH

Protein Length: 467

Fln nts: GCGTGCCGCAACTGGCGGGCTACTGGTAGTGAAAAATAATACCAGAATTCGCTCATTGTGCTATTCAACCAGATGTCTTTACTGTAATTAAAGCATCTTTCTGTGACCGATGATAACTGCTTTCTTGTCAAAAAATGGTTCATTCTTTCAGCGTGTCCGACCAGAGAAATATTCTGTAGCCAGCAGAATTTCTGCAGTCGGACGACTTATATTTTGCTTTGTCATCGCTACTTCAATGGAAGTTGAAAAGTCGAAATATTTAGAGCAGTAGAGTTTTCTATAGTCGGAGACGAAATGGAACCAAAGTTTGAATCTGTTCTGAATTTACAGGGATTGGAAGGAACTTTCTAAATTCGAAGTTCGAAGTTAGAATCTTCGTTTAAGATCTCAATTCAGAGCGGAATACCATAGTTGGAGCTATTGTTGAAGGTTCTTTAGCA_-_ATGGATTTTGGAAAGGTTGTTTGGACATGCTTTCTTGGACTGGTGGCTTTTCACTCCTATGCAGAGGCAGCACCCGCAGATGCACGAATCACATCTATACCTGGCTACGACGGTACTCTTCCTTCAGATCATTACGCAGGATATGTAAAGGTAAGTAAGGCGAAGAACCTCTACTACTATTTTGTAACCTCAGAAGGCAATGCGGCTAATGATCCCGTTGTTCTCTGGCTGAACGGCGGTCCGGGTTGCTCGAGTTTTGATGGCTTTGTATATGAACATGGTCCCTTCAATTATGAAGCCGGAAAGACGGTTGGAAGTTTGCCCAAACTATACCTTAATAAATACTCCTGGGCAAAGGTGTCAAATATTATCTATCTGGATTCACCAGTTGGAGTTGGTCTTTCATATTCTGAAAACGTTGATGACTACGTAACTGGAGATCTACAGACAGCTTCAGATACTCATTCTTTCCTTTTGAAGTGGTTTGAAGAGTATCCAGAGTTCCTTTCAAATCCATTCTACATTAGTGGCGAATCATACGCAGGAATCTACGTTCCTACTCTGGCATTGGAAGTGGTTAAGGGAATCGAATCTAGGGTAACACCTATTCTGAATTTTAAGGGCTACATGGTAGGAAACGGGGTTACAGACAATACATTTGATGGCAATGCACTTGTGCCATTTGTTCATGGAATGGGGCTTATATCAGATGAGCAATATAAAGATGCGGTGGATGCTTGTAAGGGAAATTATTATGACACAGCTGATACTAGTTGTGACACCAAAATAATGGTAATCGAGCAGGAGGTCGCAAGACTCAATATTTATAACATTCTTGAGCCATGCTACCATGATCCTGAAATGCAAAAGGCTGTTGAGAATATGGAAAAAGTGCCTGAAAGTTTTAAGCAATTAGGTCAGACTGACCGGCCTTCCAAAGTAAGAAGAAGGATGTTTGGTCGTGCTTGGCCAATGAGAGCACCAGTTAAAGATGGGAATGTTCCAACCTGGCCGAAGATCAGCGGAGTCCCTTGCACAGATGATCGCTTTGCTAGTGTTTGGTTAAATGATGAATCTGTCAGGCAGGCAATTCATGCTCAAACGAAGGAAGTAGCTGGAGAATGGGCGATATGTACAGACCGTATTAATTTCAACCATGATGCTGGAAGTATGATCCCCTACCATGCAAATCTTACAGGAAAAGGCTACCGTGCATTTATCTACAGTGGTGACCATGATATGTGTGTGCCCTACACTGGAACTGAGGCTTGGACAAGGTCCCTGGGTTATGAAACAAGAGATGCATGGCGCCCCTGGATTGTGGATGATCAAGTTGCTGGATATACTCAAGGATATGCCTACAACCTGACCTTTGCAACTATCAAGGGAGCTGGACAT

Fln Alignment:

Contig6066___LVAFHSYAEAAPADARITSIPGYDGTLPSDHYAGYVKVSKA--KNLYYYFVTSEGNAANDPVVLWLNGGPGCSSFDGFVYEHGPFNYEAGKTVGSLPKLYLNKYSWAKVSNIIYLDSPVGVGLSYSENVDDYVTGDLQTASDTHSFLLKWFEEYPEFLSNPFYISGESYAGIYVPTLALEVVKGIESRVTPILNFKGYMVGNGVTDNTFDGNALVPFVHGMGLISDEQYKDAVDACKGNYYDTADTSCDTKIMVIEQEVARLNIYNILEPCYHDPEMQKAVENMEKVPESFKQLGQTDRPSKVRRRMFGRAWPMRAPVKDGNVPTWPKISG------VPCTDDRFASVWLNDESVRQAIHAQTKEVAGEWAICTDRINFNHDAGSMIPYHANLTGKGYRAFIYSGDHDMCVPYTGTEAWTRSLGYETRDAWRPWIVDDQVAGYTQGYAYNLTFATIKGAGH
B8LQ79_________________LLAAVQYAAAAPASALVKSLPGFDGEFPSKHYSGYITVDKARGKKLFYYFATSQGNPAEDPLVLWLNGGPGCSSLDGFIYEHGPFNFRRGDQPGSKPVIELNPFSWTKISSIIYLESPAGVGYSYSDTENDYITGDLSTASDNYKFLLQWFEEYPEFVHNPFFIAGESYAGVYVPTLAQQVVNGIEVGVEPSLNFKGYLVGNGVTDVNYDGNAIVPFVHGMGLISESLYEEVKQACNGNYWNATSSLCQSKLGAVHQAVSKLNTYDILEPCYHSPDIQEVVTIQEKLPESFKSLGVTDRPFPVRRRMFGRAWPMWSAVKDGKVPMWPQLGDQLGAQHLICMDTQVSHVWCNDPLVREAIHAESENISGRWQVCADRITYTRDAGSMIKYHRNLTTKGYRSLIFSGDHDMCVPYTGSEAWTRSMGYKITDEWRPWFLNDQVAGYTQGYDHNLTFATIKGSGH

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
196	20	80			0.995493
240			83	16	0.994512
326			16	83	0.994512
414	20			80	0.995493
415		20	80		0.995493
416	20		80		0.995493
417	80			20	0.995493
418			80	20	0.995493
459	33		66		0.997452
460		33		66	0.997452
461	33			66	0.997452
462			66	33	0.997452
485	20		80		0.995493
486	20		80		0.995493
489			80	20	0.995493
568	25	75			0.996473
624	16			83	0.994512
625	16			83	0.994512
653	50			50	1.0
697	12		87		0.992554
699			12	87	0.992554
751		85		14	0.993533
753			85	14	0.993533
936	20			80	0.995493
939		80	20		0.995493
940		80		20	0.995493
979		80	20		0.995493
1033	83			16	0.994512
1187			85	14	0.993533
1189			85	14	0.993533
1288	20		80		0.995493
1291	80			20	0.995493
1507	20			80	0.995493
1508	80	20			0.995493
1510	80			20	0.995493
1567			80	20	0.995493
1583	20	80			0.995493
1584		80		20	0.995493
1585	20		80		0.995493
1586		20		80	0.995493
1635		75		25	0.996473
1671	16		83		0.994512
1672		16	83		0.994512
1674			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain